Detail information of Os08g0199300_circ_g.2


General Information
CircRNA Name Os08g0199300_circ_g.2
ID in PlantcircBase osa_circ_036282
Alias NA
Organism Oryza sativa
Position chr8: 5747835-5748933  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0199300
Parent gene annotation Similar to YyaF/YCHF TRANSFAC/OBG family small GTpase plus RNA b
inding domain TGS (Fragment). (Os08t0199300-01)
Parent gene strand +
Alternative splicing Os08g0199300_circ_g.1 Os08g0199300_circ_g.3 Os08g0199300_circ_g.4 Os08g0199300_circ_g.5 Os08g0199300_circ_g.6 Os08g0199300_circ_g.7 Os08g0199300_circ_g.8 Os08g0199300_circ_g.9
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0199300-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAGATGGAAAGGATGTCCGCTTTGGAGATTGGAAAAGTGCTGACATTGAGATCTTGAATACC
TTCCAGCTACTTACAGCTAAGCCAGTTGTCTATTTGgttgggttaccaaatgttggcaaatcca
ctttctttaacatagtaacaaagctgtctatcccagctgagaacttccctttctgtaccatcga
cccaaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGGGTTACCAAATGTTGGCAAATCCACTTTCTTTAACATAGTAACAAAGCTGTCTATCCCAG
CTGAGAACTTCCCTTTCTGTACCATCGACCCAAATGAGGCACGGGTATATGTTCCAGATGAGAG
ATTTGATTGGCTTTGTCAACTTTACAAGCCAAAGAGTGAGGTTTGTTTCTTTCCTACACTATAA
TGTGCAACTTCTTTTCTTATGTTTCAAGACATATCATGTCTTCTGAATTTCTTTGCAGGTGTCT
GCATATCTAGAAATCAATGACATAGCCGGGCTTGTTAGAGGAGCCCATGCTGGGGAGGGTTTGG
GCAATGCCTTCCTATCCCATATACGCGCTGTTGATGGAATTTTTCATGTATTGAGTATGTTCCT
GTTACTTATCATTTTGATTGGATCTTGCATATTGAGTGTGTAGTCATGGACTTGTGCTATTGTT
TCAGTGTGAAGCAAAGTAAACGTTGTGATTGTTCTAGTGAAAGCATTGGTGCTCAGATTCGAAT
CAATTTTCTTTGCTTTTTTGTTTAACCAGTAATCACAAGGTCATGCACTTCATGAATGCTGCTT
ATGTTTATCAGGAGCATTTGAAGACAAAGAAGTTACTCATATTGATGATTCAGTGGATCCTGTT
AGAGATTTGGAAACTATTGGTGAAGAGCTGAGACTCAAGGTTTTTATAGGGATGCTTGATTTGC
ACGTCAGTAAATGCTTTGGTTAAACCTTCTTTTAAATCCTATCGCACTTTCTTTTGCAGGACAT
TGAGTTTGTGCAGAACAAAATTGATGACCTTGAGAAATCAATGAAGAGAAGCAATGATAAGCAG
CTGAAACTCGAGCATGAATTATGTGAGAAGGTGGGGCACCTGTTACAGCCAACCTCTGTGTTGC
TAAATTTGTCTGTTAGCAGCCTTGCATAATTTCAAATTGTTATTTTCTTGAGTGAGTGGAAGCT
TACTTTTGGCTTCTCTTCCTAACAGGTCAAAGCCCATCTTGAAGATGGAAAGGATGTCCGCTTT
GGAGATTGGAAAAGTGCTGACATTGAGATCTTGAATACCTTCCAGCTACTTACAGCTAAGCCAG
TTGTCTATTTG
Conservation Information
Conserved circRNAs osi_circ_018295
PMCS 0.167878344
Functional Information
Coding potential Y
Potential coding position 5748644-5748930(+)
5747925-5748929(-)
Potential amino acid sequence MKRSNDKQLKLEHELCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAKPVVYLVGLPNVGK
STFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDIAGLVRG
AHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRDLETIGEELRLKDIEFVQNK
IDDLEKSMKRSNDKQLKLEHELCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAKPVVYLV
GLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEIND
IAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRDLETIGEELRLKD
IEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTA
KPVVYLVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVS
AYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRDLETIG
EELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKAHLEDGKDVRFGDWKSADIEILN
TFQLLTAKPVVYL(+)
MVQKGKFSAGIDSFVTMLKKVDLPTFGNPTK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017