Detail information of Os03g0773600_circ_g.16


General Information
CircRNA Name Os03g0773600_circ_g.16
ID in PlantcircBase osa_circ_022065
Alias NA
Organism Oryza sativa
Position chr3: 32067740-32069213  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0773600
Parent gene annotation Kinesin, motor region domain containing protein. (Os03t0773600-0
1);Hypothetical conserved gene. (Os03t0773600-02)
Parent gene strand +
Alternative splicing Os03g0773600_circ_g.1 Os03g0773600_circ_g.2 Os03g0773600_circ_g.3 Os03g0773600_circ_g.4 Os03g0773600_circ_g.5 Os03g0773600_circ_g.6 Os03g0773600_circ_g.7 Os03g0773600_circ_g.8 Os03g0773600_circ_g.9 Os03g0773600_circ_g.10 Os03g0773600_circ_g.11 Os03g0773600_circ_g.12 Os03g0773600_circ_g.13 Os03g0773600_circ_g.14 Os03g0773600_circ_g.15 Os03g0773600_circ_g.17 Os03g0773600_circ_g.18 Os03g0773600_circ_g.19 Os03g0773600_circ_g.20
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0773600-02:1
Os03t0773600-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGCATTAATCTGCAGAAAGCACTGTTTGAACTTGAAGAAACCAATAAGCGCAATCGAATGGAG
CTCCAGCATCTTGATGATGCAATTGCAAGACAACAGgttcactcagcagataagattcttgaac
tcttgaacataggcaacagtcggcgcaagacagagagcacagaagcaaactcaacttcttcacg
gtaattac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCACTCAGCAGATAAGATTCTTGAACTCTTGAACATAGGCAACAGTCGGCGCAAGACAGAGA
GCACAGAAGCAAACTCAACTTCTTCACGGTAATTACATATTGTGAATTTCCTTCTTTCCTTTCT
GTAAGTAGATGCTGTTATGGCCATTCAGCTTTTGAAGAATTTGTTGATATCTTGCTTAGCAAAA
CAATGCATTTCTATCTGTTTAATGAACTGCTATTTAAGGAGGATACTTAATATCTTAATCTGAT
GTATCACTGAGATTTTGTTTCTACGAAGACAGCTGCTGTAGGACGTAGTGCTGGACATCTTTAC
TACATTCTATTAATAAGATTTATCCTTTTTTTTTAAATCCAAGGTCACATGCTGTCCTGGAGAT
AACTGTGAAGCGAAAACAAAAAGGACAATATGGTAGTCAGGTTCTTCGTGGAAAGCTTGCGTTG
GTTGACCTTGCGGGCAGGTAATACACTAATACCTACTCCTTTTTGGATTGTTTTTCTCATTTCA
CCCTGCTAAGAAAGTAAGCTATAAAGCAACGCTTATATTATAACAGTGAGAGGGCCTCTGAAAC
AAACAACTTTGGGCAAAAGCTTAGAGATGGAGCCAACATTAACCGTTCACTTCTAGCGCTAGCG
AACTGCATCAATGCCCTTGGCAAGCAAAACAAGAAAGGTCTTGCATATGTTCCATATCGAAACA
GGTATTTCCATTTTCAGGTGTATCATTCTGGAATCCATCGTTTTAAAAATCTTAGTTATATGAC
AATGGTACTCTGCAGCAAATTAACACGAATCCTGAAGGATGGGCTCTCTGGTAACTCTCGTACT
GTTATGGTTGCTACGATATCACCAGCTGATGATCAGTATCATCACACCACCAATACACTCAAGT
ATGCTGATCGTGCAAAGGAGATAAAAACACATGTCCATGTAAGGGGCCATTTCTTTTAGTCTGC
ATAACAAATTACAAGATGCTGTGTCTATGTAGTCATCACTATTCTCACCCATGCAAAATATTTA
ATTGGTTCTGAATCATAAATGTGAAAAAACCAGTTCTTATGTTGTTTGTTGTCCTGTACAGAAA
AACATTGGACATCTTGACACCCATGTTGAAGACTACAAAAGGATGATTGACAATCTCCAGGTTT
GCCTTACTGAAAAAACACAAATGAACTTTCTACAATTCTATCAGCACTCCATCACATTAAAATA
TGTTCCATTATGACTTTGTAGGTTGAGGTTTCTCAGTTGAAGAAGGAATTAGCTGAGAAGGAGC
ATCAGTTAAGTGTAAAACCTACTGAAAAAGCTGCAGACAATGAGCTATCTTGGCTAAATATCTT
GAGCCAGGAAACTGGCGAGAATGTTCAAGAACGCATTAATCTGCAGAAAGCACTGTTTGAACTT
GAAGAAACCAATAAGCGCAATCGAATGGAGCTCCAGCATCTTGATGATGCAATTGCAAGACAAC
AG
Conservation Information
Conserved circRNAs NA
PMCS 0.270477652
Functional Information
Coding potential Y
Potential coding position 32068576-32069210(+)
32069105-32067770(+)
Potential amino acid sequence MVATISPADDQYHHTTNTLKYADRAKEIKTHVHKNIGHLDTHVEDYKRMIDNLQVEVSQLKKEL
AEKEHQLSVKPTEKAADNELSWLNILSQETGENVQERINLQKALFELEETNKRNRMELQHLDDA
IARQQVHSADKILELLNIGNSRRKTESTEANSTSSRSHAVLEITVKRKQKGQYGSQVLRGKLAL
VDLAGSERASETNNFGQKLRDGANINRSLLALANCINALGKQNKKGLAYVPYRNSKLTRILKDG
LSGNSRTVMVATISPADDQYHHTTNTLKYADRAKEIKTHVHKNIGHLDTHVEDYKRMIDNLQVE
VSQLKKELAEKEHQLSVKPTEKAADNELSWLNILSQETGENVQERINLQKALFELEETNKRNRM
ELQHLDDAIARQQVHSADKILELLNIGNSRRKTESTEANSTSSRSHAVLEITVKRKQKGQYGSQ
VLRGKLALVDLAGSERASETNNFGQKLRDGANINRSLLALANCINALGKQNKKGLAYVPYRNSK
LTRILKDGLSGNSRTVMVATISPADDQYHHTTNTLKYADRAKEIKTHVHKNIGHLDTHVEDYKR
MIDNLQVEVSQLKKELAEKEHQLSVKPTEKAADNELSWLNILSQETGENVQERINLQKALFELE
ETNKRNRMELQHLDDAIARQQVHSADKILELLNIGNSRRKTESTEANSTSSRSHAVLEITVKRK
QKGQYGSQVLRGKLALVDLAGSERASETNNFGQKLRDGANINRSLLALANCINALGKQNKKGLA
YVPYRNSKLTRILKDGLSGNSRTVMVATISPADDQYHHTTNTLKYADRAKEIKTHVHKNIGHLD
THVEDYKRMIDNLQVEVSQLKKELAEKEHQLSVKPTEKAADNELSWLNILSQETGENVQERINL
QKALFELEETNKRNRMELQHLDDAIARQQ(+)
MFKNALICRKHCLNLKKPISAIEWSSSILMMQLQDNRFTQQIRFLNS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017