Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0466300_circ_g.3 |
ID in PlantcircBase | osa_circ_007049 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 17204903-17206065 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0466300 |
Parent gene annotation |
Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica. (Os10t0466300-01);Similar to Yarrowia lipol ytica chromosome C of strain CLIB99 of Yarrowia lipolytica. (Os1 0t0466300-02) |
Parent gene strand | - |
Alternative splicing | Os10g0466300_circ_g.1 Os10g0466300_circ_g.2 Os10g0466300_circ_g.4 |
Support reads | 1 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0466300-02:3 Os10t0466300-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_008498 |
PMCS | 0.253789524 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17205222-17205004(+) |
Potential amino acid sequence |
MDCNSFNLGSVIFQCMDAIVISLLASLPNFNSLRLHIPNFDNSFSGPCPQDKTIWVERCRCISL LS*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |