Detail information of Os10g0466300_circ_g.3


General Information
CircRNA Name Os10g0466300_circ_g.3
ID in PlantcircBase osa_circ_007049
Alias NA
Organism Oryza sativa
Position chr10: 17204903-17206065  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0466300
Parent gene annotation Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica. (Os10t0466300-01);Similar to Yarrowia lipol
ytica chromosome C of strain CLIB99 of Yarrowia lipolytica. (Os1
0t0466300-02)
Parent gene strand -
Alternative splicing Os10g0466300_circ_g.1 Os10g0466300_circ_g.2 Os10g0466300_circ_g.4
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0466300-02:3
Os10t0466300-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGAATATCCACGCAATTGCTAACCTCGGCAGTGTGATCTTTCAATGTATGGATGCAATTGTA
ATTTCCCTCCTCGCTTCCTTGCCAAATTTTAACAGTctgcgtcttcacatcccaaattttgaca
acagcttcagtggtccctgtccccaggataagaccatctgggtggaaagatgcagatgtatatc
cctcttgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 297
Transcript exons: 17204903-17205019,17205137-17205241,17205991-17206065
CTGCGTCTTCACATCCCAAATTTTGACAACAGCTTCAGTGGTCCCTGTCCCCAGGATAAGACCA
TCTGGGTGGAAAGATGCAGATGTATATCCCTCTTGTCCTGAAGACTCGCCAACCTGTGTGAGGC
AAGATCCTGATGGAATATCGTAGAAGCACCAAGTATTATCCTTGGAAGCAGTCACAAAGTACTT
CTGAGTCGCATGGACTGTAACAGCTTCAACCTCGGCAGTGTGATCTTTCAATGTATGGATGCAA
TTGTAATTTCCCTCCTCGCTTCCTTGCCAAATTTTAACAGT

Genomic sequence CTGCGTCTTCACATCCCAAATTTTGACAACAGCTTCAGTGGTCCCTGTCCCCAGGATAAGACCA
TCTGGGTGGAAAGATGCAGATGTATATCCCTCTTGTCCTGAAGACTCGCCAACCTGAGTAAAGA
AAAGGTATTCATTAACTCATAAACATCTTGGGAGCTAACAGACAAAGCATGTATAAGTACATGG
ATGAATGGGAGCAGGTTACATGAGAAAGATAATGGAGTAAACCTGTGTGAGGCAAGATCCTGAT
GGAATATCGTAGAAGCACCAAGTATTATCCTTGGAAGCAGTCACAAAGTACTTCTGAGTCGCAT
GGACTGTAACAGCTTCAACCTGACAGATTTTTGTAAAACAAATAAGTTTGAAACAATAGAATTT
GAATTGAAACATTTTATATTACCAATTGAAATATTACAATATAAAATATGGTAAAAGTTGCCCT
GTTTGATTTATATTACTGAGTTATTACCATGGATTATCTATATAAATTAAATATTTTTAAAAAT
AAACTCAATAAATAGCTTAAAATAAGTTATCTAAGAAATGCAGCAAAAGAAATTTTTTTGAGAA
GATGTATTTTCCAAAGTATATAGCAAATAATCCATTTCAATAATCCAGTGCAGAGAATAATCTG
TAAAGAACAAGGGCCTTAAGGGCAATGATGGGGCATGTTCACATGTTTTGTAACTGTGAAGAGG
GCCTTTAAGGACAATGGTGGGGCATTTTCACATGTTTTGTAACTGTGAAACATGAATGGACCAG
AGTAGCTAACGGTACAAATGATAAAGAAAATTTGATGAAAGAACTGCATTTGCAGTATGACTTG
AGTTTTGAGTATCATAGCTCAACATGCCAAAATGTGTTATAATCATATTTGTGACAAATCCTTG
ATAGATAGAAATTTCATAAATATTTTCAATTTTACTGTAACAGAAATTTAGAAGCCACAGAAAG
GAAATATGACTGTATGCATGCAAGAAGAATACCAGCTATCCAGCAATCTGTAATTCCAATATCC
AAAAACATAAAATGGCAAAGAATGTGAAGTTATTTTGCAGAAGAATATCCACGCAATTGCTAAC
CTCGGCAGTGTGATCTTTCAATGTATGGATGCAATTGTAATTTCCCTCCTCGCTTCCTTGCCAA
ATTTTAACAGT
Conservation Information
Conserved circRNAs osi_circ_008498
PMCS 0.253789524
Functional Information
Coding potential Y
Potential coding position 17205222-17205004(+)
Potential amino acid sequence MDCNSFNLGSVIFQCMDAIVISLLASLPNFNSLRLHIPNFDNSFSGPCPQDKTIWVERCRCISL
LS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017