Detail information of BGIOSGA013864_circ_g.8


General Information
CircRNA Name BGIOSGA013864_circ_g.8
ID in PlantcircBase osi_circ_000452
Alias NA
Organism Oryza sativa ssp. indica
Position chr3: 39183324-39184536  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method DCC
Parent gene BGIOSGA013864
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013864_circ_g.1 BGIOSGA013864_circ_g.2 BGIOSGA013864_circ_g.3 BGIOSGA013864_circ_g.4 BGIOSGA013864_circ_g.5 BGIOSGA013864_circ_g.6 BGIOSGA013864_circ_g.7 BGIOSGA013864_circ_g.9
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   TC-AT
Number of exons covered BGIOSGA013864-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCACTACTTTTTCATGCATATCTTCAAAACTCCTGCATTTATGTGTATGACTTTCACTGTGA
TGCTCATGCATTGGCGCATTGTTGGTTGTGTCAGGTcaattaacgagaggatttcattttaatg
cagattatccattatgaattgcccaatgatccagagacttttgttcatcgttctggacgcactg
gccgagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATTAACGAGAGGATTTCATTTTAATGCAGATTATCCATTATGAATTGCCCAATGATCCAGAG
ACTTTTGTTCATCGTTCTGGACGCACTGGCCGAGCTGGGAAAGCAGGAACTGCAATCTTGATGT
TCACAAACAGCCAGAGAAGGACAGTTAGATCACTTGAGCGTGATGTTGGATGCAGATTTGACTT
CATAAGTCCTCCAGCAATTGAGGATGTGCTGGAGTCCTCTGCTGAACATGTCATAGCTACTTTA
AGAGGTGTGCACACGGAGTCGATTCAGTACTTCATTCCAGCAGCTGAAAGACTGCAAGAAGAAT
TAGGACCTAATGCTCTTGCTTCTGCATTGGCACATCTGAGTGGATTTTCTCAGCCACCCTCTTC
ACGTTCTCTTATCAGTCATGAGCAGGTAAGAATTAATAAGTGACCCGAGGAAATTACATGTATC
CATCATTAACTGATATTCTACTATTTCTACCATTGTATCGAACACTTCCTTTTTCCCTACCTTA
GTTATAGCTACCCATCAACTTCATCCAGCTGTCCTGATTTATGCCTTCTACATTTGAGGATTTA
TATCCACCTAATTTTATATGAATACAATGGGCTACTAGTACTGATTACTGAAATTGCATCTTTT
ATAAATTTATAATGGGCAATCAAATAATTGTATAGAAAAGCTCCACTTTTTTTTTTGAGTTGCT
CAAAGTTTTGTTGTGCGTTTACCGTTTATCTTTTCTTTTTAAAGCTAGAAGCACTCATATGATT
TCTTACCCTCTATTAAAACACAGGGATGGGTGACTTTGCAACTAACTAGAGATCCAGGATATGG
AAGGGGGTTCTTTTCTCCTAGATCTGTTACTGGCTTTCTGTCTGATGTTTCTTCAGCTGCTGCT
GATGAAGTTGGCAAAATTTTCCTTACAGCAGATGAGAAGGTGAGCTCTTGCTTGAGCATGTCGA
TCATTAATTTCTGTGCATGAGTGCATTGGGTCTATGAGCAATTGAGCATGCAGTTTTGAAGCTG
TTGGCTGATACTAGTTTTGCAGCATATATATCTTCTTTAATTAATGTGCATTACATGCAATAGT
ATGCATTGCAGAAATCGATGACACATATCACTACTTTTTCATGCATATCTTCAAAACTCCTGCA
TTTATGTGTATGACTTTCACTGTGATGCTCATGCATTGGCGCATTGTTGGTTGTGTCAGGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019