Detail information of BGIOSGA016676_circ_g.1


General Information
CircRNA Name BGIOSGA016676_circ_g.1
ID in PlantcircBase osi_circ_014509
Alias Chr03:27907512_27909617(MH63RS2), Chr03:27747737_27749842(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23171231-23173336  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA016676
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016676_circ_g.2 BGIOSGA016676_circ_igg.1 BGIOSGA016676_circ_igg.2 BGIOSGA016676_circ_g.3 BGIOSGA016676_circ_igg.4 BGIOSGA016676_circ_igg.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TA-AG
Number of exons covered BGIOSGA016676-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTAGAGCAAGACAAGTTCGTGTTTCTTTAGAGAACCAAGTTGCACGGAAGAAGGTCCCTGAAC
AAGATGATCATGAGAATCATGTTCGAGAAATTGAGGgtcattgaactatataaaaaggttgttt
gtcatgggtatttcatcgaagtggtttaaatcactggttggtataagaaagcaagaaaaggccc
ggaatgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCATTGAACTATATAAAAAGGTTGTTTGTCATGGGTATTTCATCGAAGTGGTTTAAATCACTG
GTTGGTATAAGAAAGCAAGAAAAGGCCCGGAATGCAGAAAAACAAGAAAAGGCACAAAATGCAG
AGAGCTGCGAAACAGTAAGTTATGGTATTCACCAAGATTTTGTATCGTGTAATTATGTAGCAAG
TACTTGTTCTGATCGACTAAGTCTGGAGTAATGATTGTTTTGTCTGTCTTCAACTTTTTTCCTT
TTTTTTGTTTCTAGTGTTTAGAGCCAGCTTGATAGGTGGATATTCTACTGTTTTTTGTCTTCCT
CTGTCAGAACATGACAAATCTTGAAGAGTGAGCAAAATTGCAAAAGAGTAGATGGTTTACCAGA
GTTGGTTCGGCGGATGCCACACAAGTGCTGTTGTTGACATGTCGTTGTCACATGCTTGTTGCAC
AACTACTCTTCTGAGTGCCCAACACAGATTATGTGGCAATACCTGGATATTAAATGTTCTGTAT
TGGTGTAGTAAATGTTTGGGCTCCTTACAATATGCCATTACCATCATTGTTCTAGTGCTTGTAA
CCCTCCTCACCTATGAAAGAAAACCAAATGGGTATATTGGAGTACTGTTGTGGTTGCTTTGGTT
TTTAGTGTCCTACTGGTCTGGTAATTACAGATAGATGAATGACTGATTGTTTTGTGTAACCAAC
AAATGATTGCACTGCTGTTTATTCCTTGGGTGTCTGTCTTTTTTTCTTGACTTCTTTTCCTTTA
TTCTACTTCGCAATGCATTACTATGCAAATGCATCAGCCACTGCCCACTGGAGTGTTAGCTATT
TATTTTAAATGTAGCATGTCTAACTTGCTTGGATTAAAGACCGTTATTGTAGTTGTAATAGGAG
TATTCATGCTGTTCATTTTGTTTACTTCCATTCAATTAAATAAAATTTTAAATTATTAATATGA
TATATATTGTAGTTTAGTATCGTAGTATGTGTTTCATGCTGCCCTTGCCCAAAGTATCACTTTA
TAAGCTTGATTTCAAATTACCAGAGTGCATTAGTATGTTTTAAGTTTTGAGAACATATTCCTTC
TTGACTCTTTTTGCCACTGCTGTACAAGTTGGCATGAACTGCTGTTTTTACTGGGCTGTCTTAC
CATCATGACAATGTATTAAAATTATTGTAGAGGACCCCTGCTGCTCAGTTGCTTCACAAACGGA
AACATTCTTTGGATACTGAACGTGCAATCTTAGTAGAAGAACTTGCAGTGCAAAGTGAACCATT
GACTGATGACACCAACACGCAGACAGTTTCAGATTCCATTTCTTCAGACAGTACATTGCTTGGA
GTACATATTTCTCAGACCGAAGAGCATAAAACTAAAGAGGATGTGGCTGCAACACTCATTCAGT
CTGCGTTTCGAGCATTCCTGGTATGCTCCCTTTGAATATCACTATGCTAGATAACTGATAGCAT
GCTGTCTCTGGTCTCTGCTCTGCATGTATAGTAAACACACTAATGAGTGTGACTGTCTTCATGT
TTTAAGGACTTATCCAAATAAACAATGCAGAAATTGTCAGAATGTGATAAGAGCAAATGCATTA
TATTTGAACAAGATAATCCAAGAAAAAGGAGAAAGTATTTTAGTACTTAGAGGTTCTAGTTAAT
TTTTCAAATATCTAGAAATAGTCACATGAAACTGAATCTTCATTTGCTAAATTAAACTTAGGAA
ACTATCCAGATGTAGTCGTTTGTGTATAACATAGCATAGACTATGAAAGCAAAAGGCTTTAGTA
AAAACATAGCTCATGATTTTCAGGCTTCCTTCATAGTCTTCTGTGTTTGAGATTTTGAACTTTT
TGTTGCATTTATGATTACCAGGCTAGACGGGCTTTACGGGCATTGAAAGGAATAGTTATACTGC
AGGCCCTTGTAAGGGGTCATATCATAAGAAAGCAGACATCAGAAACACTTCAGTGTATGCAAGC
TCTAGTAAGAGCTCAAGCTCGTGTTAGAGCAAGACAAGTTCGTGTTTCTTTAGAGAACCAAGTT
GCACGGAAGAAGGTCCCTGAACAAGATGATCATGAGAATCATGTTCGAGAAATTGAGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021