Detail information of BGIOSGA016676_circ_g.3


General Information
CircRNA Name BGIOSGA016676_circ_g.3
ID in PlantcircBase osi_circ_014512
Alias Chr03:27907512_27908435(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23172413-23173336  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016676
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016676_circ_g.1 BGIOSGA016676_circ_g.2 BGIOSGA016676_circ_igg.1 BGIOSGA016676_circ_igg.2 BGIOSGA016676_circ_igg.4 BGIOSGA016676_circ_igg.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TA-AG
Number of exons covered BGIOSGA016676-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTAGAGCAAGACAAGTTCGTGTTTCTTTAGAGAACCAAGTTGCACGGAAGAAGGTCCCTGAAC
AAGATGATCATGAGAATCATGTTCGAGAAATTGAGGaggacccctgctgctcagttgcttcaca
aacggaaacattctttggatactgaacgtgcaatcttagtagaagaacttgcagtgcaaagtga
accattga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGACCCCTGCTGCTCAGTTGCTTCACAAACGGAAACATTCTTTGGATACTGAACGTGCAATCT
TAGTAGAAGAACTTGCAGTGCAAAGTGAACCATTGACTGATGACACCAACACGCAGACAGTTTC
AGATTCCATTTCTTCAGACAGTACATTGCTTGGAGTACATATTTCTCAGACCGAAGAGCATAAA
ACTAAAGAGGATGTGGCTGCAACACTCATTCAGTCTGCGTTTCGAGCATTCCTGGTATGCTCCC
TTTGAATATCACTATGCTAGATAACTGATAGCATGCTGTCTCTGGTCTCTGCTCTGCATGTATA
GTAAACACACTAATGAGTGTGACTGTCTTCATGTTTTAAGGACTTATCCAAATAAACAATGCAG
AAATTGTCAGAATGTGATAAGAGCAAATGCATTATATTTGAACAAGATAATCCAAGAAAAAGGA
GAAAGTATTTTAGTACTTAGAGGTTCTAGTTAATTTTTCAAATATCTAGAAATAGTCACATGAA
ACTGAATCTTCATTTGCTAAATTAAACTTAGGAAACTATCCAGATGTAGTCGTTTGTGTATAAC
ATAGCATAGACTATGAAAGCAAAAGGCTTTAGTAAAAACATAGCTCATGATTTTCAGGCTTCCT
TCATAGTCTTCTGTGTTTGAGATTTTGAACTTTTTGTTGCATTTATGATTACCAGGCTAGACGG
GCTTTACGGGCATTGAAAGGAATAGTTATACTGCAGGCCCTTGTAAGGGGTCATATCATAAGAA
AGCAGACATCAGAAACACTTCAGTGTATGCAAGCTCTAGTAAGAGCTCAAGCTCGTGTTAGAGC
AAGACAAGTTCGTGTTTCTTTAGAGAACCAAGTTGCACGGAAGAAGGTCCCTGAACAAGATGAT
CATGAGAATCATGTTCGAGAAATTGAGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021