Detail information of BGIOSGA016676_circ_g.2


General Information
CircRNA Name BGIOSGA016676_circ_g.2
ID in PlantcircBase osi_circ_014510
Alias Chr03:27903816_27909617(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23171231-23177034  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA016676
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016676_circ_g.1 BGIOSGA016676_circ_igg.1 BGIOSGA016676_circ_igg.2 BGIOSGA016676_circ_g.3 BGIOSGA016676_circ_igg.4 BGIOSGA016676_circ_igg.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TA-AG
Number of exons covered BGIOSGA016676-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCCAACAGATCTTGCGTCTTTGTCCACATGCCAACCAAAAGCCAAGCTTGTGCAAGCGAATAC
TCCAGTCAAGAAGCGGTTATCTCTGCCAACTAATGGgtcattgaactatataaaaaggttgttt
gtcatgggtatttcatcgaagtggtttaaatcactggttggtataagaaagcaagaaaaggccc
ggaatgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osa_circ_020802
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021