Detail information of Os03g0846400_circ_g.6


General Information
CircRNA Name Os03g0846400_circ_g.6
ID in PlantcircBase osa_circ_022697
Alias NA
Organism Oryza sativa
Position chr3: 35591955-35592788  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0846400
Parent gene annotation Peptidase, trypsin-like serine and cysteine domain containing pr
otein. (Os03t0846400-01)
Parent gene strand +
Alternative splicing Os03g0846400_circ_g.1 Os03g0846400_circ_g.2 Os03g0846400_circ_g.3 Os03g0846400_circ_g.4 Os03g0846400_circ_g.5 Os03g0846400_circ_g.7 Os03g0846400_circ_g.8
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0846400-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATCCTGTCATGGATGTCAATTCTCATTATCTTTAAGCATTATTTGCCAACCCTGCAAAACAG
GATTCTTAAACGGTTACAAAATTTGAAAAGAGTCAGgaaacataccgatatatgcatgctcagg
cacagctatcagttgccaggaggggtctggtacaatttttctgacttcggctagtttggttaga
gctttcta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 580
Transcript exons: 35591955-35592085,35592169-35592438,35592610-35592788
GAAACATACCGATATATGCATGCTCAGGCACAGCTATCAGTTGCCAGGAGGGGTCTGGTACAAT
TTTTCTGACTTCGGCTAGTTTGGTTAGAGCTTTCTATGATACTGAAGAAATTTATGATAACTTA
AAGATTGAAGTGCGCCATGAAGGCAATGAAGTGTACAAGGGTTATTTGGCAAAATATGATTTAG
ACAAGAACTTTGCTGTTGTCTACACCATGGAGTCTCTTGATGTTCATGTTGTACTTTCCGAACA
TTTGAAGGATAGGTATGCCAAAAAGAAGCTAGTAGCTGTATCGCGTAACAAGTATGGCGGATTA
ATTACCAAAAGTGTGATGGTGGGTAGTCATCATAATTCAAACAGATCTGAAGTTTGCCATGACA
TTTCGGTGATGGCTGAGGACTGGGAAGGTGGACCTCTCTTTGACTTTGATGGGAAATTTGTTGG
CATGAATAAGTTTTTGGCTATGGATACAACCTTTATCCTGTCATGGATGTCAATTCTCATTATC
TTTAAGCATTATTTGCCAACCCTGCAAAACAGGATTCTTAAACGGTTACAAAATTTGAAAAGAG
TCAG

Genomic sequence GAAACATACCGATATATGCATGCTCAGGCACAGCTATCAGTTGCCAGGAGGGGTCTGGTACAAT
TTTTCTGACTTCGGCTAGTTTGGTTAGAGCTTTCTATGATACTGAAGAAATTTATGATAACTTA
AAGGTTGGTGCTGCTAGTCATCCTTTACTAATTTTCGCTTGTTTGCTTAGGATATTTGTGACTT
GTTTCTTGCTTTGTCATTATAGATTGAAGTGCGCCATGAAGGCAATGAAGTGTACAAGGGTTAT
TTGGCAAAATATGATTTAGACAAGAACTTTGCTGTTGTCTACACCATGGAGTCTCTTGATGTTC
ATGTTGTACTTTCCGAACATTTGAAGGATAGGTATGCCAAAAAGAAGCTAGTAGCTGTATCGCG
TAACAAGTATGGCGGATTAATTACCAAAAGTGTGATGGTGGGTAGTCATCATAATTCAAACAGA
TCTGAAGTTTGCCATGACATTTCGGTGATGGCTGAGGTACACTCGCATTAATACAAGCACATTT
TGACACTTTTCTGTTACCATATGCGCTAAACTTTATCAGAGCCTATAAAAATGGTCTTTTTTTT
TCTATGCAACTCTTGTTCAATATCACTTTGTTTTGTTGAAATGTAACCCTTGTTGACCATCACT
TTATATTTGTGTTAGGACTGGGAAGGTGGACCTCTCTTTGACTTTGATGGGAAATTTGTTGGCA
TGAATAAGTTTTTGGCTATGGATACAACCTTTATCCTGTCATGGATGTCAATTCTCATTATCTT
TAAGCATTATTTGCCAACCCTGCAAAACAGGATTCTTAAACGGTTACAAAATTTGAAAAGAGTC
AG
Conservation Information
Conserved circRNAs NA
PMCS 0.23108711
Functional Information
Coding potential Y
Potential coding position 35592257-35592033(+)
35591977-35592731(-)
Potential amino acid sequence MESLDVHVVLSEHLKDRYAKKKLVAVSRNKYGGLITKSVMVGSHHNSNRSEVCHDISVMAEDWE
GGPLFDFDGKFVGMNKFLAMDTTFILSWMSILIIFKHYLPTLQNRILKRLQNLKRVRKHTDICM
LRHSYQLPGGVWYNFSDFG*(+)
MHISVCFLTLFKFCNRLRILFCRVGK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017