Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G07890_circ_g.17 |
ID in PlantcircBase | ath_circ_001220 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 2438709-2439336 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G07890 |
Parent gene annotation |
MEE6 |
Parent gene strand | + |
Alternative splicing | AT1G07890_circ_g.1 AT1G07890_circ_g.2 AT1G07890_circ_g.3 AT1G07890_circ_g.4 AT1G07890_circ_g.5 AT1G07890_circ_g.6 AT1G07890_circ_g.7 AT1G07890_circ_g.8 AT1G07890_circ_g.9 AT1G07890_circ_g.10 AT1G07890_circ_g.11 AT1G07890_circ_g.12 AT1G07890_circ_g.13 AT1G07890_circ_g.14 AT1G07890_circ_g.15 AT1G07890_circ_g.16 AT1G07890_circ_g.18 |
Support reads | 3 |
Tissues | seedlings |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G07890.4:4 AT1G07890.3:4 AT1G07890.8:4 AT1G07890.7:4 AT1G07890.5:4 AT1G07890.2:4 AT1G07890.1:4 AT1G07890.6:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.260227113 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Pan et al., 2017 |