Detail information of BGIOSGA001567_circ_igg.1


General Information
CircRNA Name BGIOSGA001567_circ_igg.1
ID in PlantcircBase osi_circ_009531
Alias Chr01:18305857_18310226(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 19197343-19201712  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA001567_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACCCCACCAGCAGGAGGATTAACTTTGCCAAGTTCCATAAAAAAGCAAGTAGCCATCACCAA
CATAAGAACTGATATAGTGAACTCCATTTTCCGAGCccttttctattcataaatgtacacctaa
atcttcctgcttctcttgtatttgtatgtgttgaacttcaatctcaccagaaactgaattggtg
gggaatgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTTCTATTCATAAATGTACACCTAAATCTTCCTGCTTCTCTTGTATTTGTATGTGTTGAAC
TTCAATCTCACCAGAAACTGAATTGGTGGGGAATGGATCTGAAAGGTTAACTTTTCTGAAAGCC
AAGTAGATCAGAGCAGCAATATAGGCTGCCATGAAAGGGAAAACAAGGCTGCTAATTATTGCAT
TAACAACCCTTGGAAGGTCGCTATGAACAAGCCAAGCGACAAAGCTAGTACAGAAGAAATAAAT
ATTGATTCCAATAATCACCAATGACAGTATCCACGCGATTCGGATAATCTACATAAAAGAGTAA
AATTCCCAAGAGTTAAGAAGAATGAGTTCAATTTGATGACAAATGTATGCCATTTTAAGACAAC
ACAGGGAATAATGAAAACTATGGTGTTATTGAGGAAGTAAAAGTTATTCTATGCAATAATGCAA
ATTATGTTGAAGATTTCCGATTATCTAGTAATTAAATGGAAATAATTCTTCAAGTAACTGTGAT
TCATTTGAAGTAAAACCATTGTCTAAAAATATGGATGCAGAATATAATAACACAACAAGAAACG
TTACTACCTTGAAATTACTCTCACTCTAGAATTTGAACCATAATTATATACTCCAATGTTTACT
GAAACACCATGCTATGAGGTAATTTTACAAATTGAAAGCTCTAACATAGTAACATGCATTCGTG
ATCAGCCTACAGTTCTAGTTGAGATTTCAAATCTCATATATTCACTCTTACAATGGGATATATG
TAACGCCCATGTTCCAACATGCACATGAACCTAGACTTGATACACCAGAACTCTACACATGGAT
AGCCATATAGTAGTTCTTAGACTATCATAACAAAGTAATTAAATTATATGTTGCTACATTTGGT
CCCTAGTTGATATAGTGTTTCATTCTAAGAGTATAACTATGAAAGAATTACCCATAAATCATTT
TGATATGAATGAAAGACATAGATTTGCAAATATATTTCAACCATAGAGTATCAGACAGGGAAGA
ACCAACAATCACCACTGTCTACCAACTCCATTTTATGCAAATAAAGATATACCTGGCTGGAACT
AGAATCTAACATTATTTTTTCTTTCTGTTGCCATCTATACACTAGCTCGTATTTGCACCCCTTT
TCTAAAAAGCATTGGCATGTTATTAAGTGGAAAAATATATTATATATATGAGAGATGCTAATTA
TTATTTATCCAATGATTTTATGGTTTATATGTTGGCACATAAAAATAGCAGCAGGGACATCAAT
TTATCAATAAGAGAAGCTGGGGAAATATTGTGTGTCAAACTCAATGCAAAGTGGACACTGAGGA
AATGGGGGCATGTGCACAAAAGAAAAATGTTCATGAAAAGGGGACTATCATGCTTATAGCTTCT
ATTTACAACTGTTTAGAAAAGAGTCTGCTAATTAGTGTTTTTTCCCAGCACAAACTACTTTAGA
GTTGTATAGTTACCAGTGGTAAGTAAGGCGTATAAGTTATTTACATATGTACAGCAATAGCTGG
TCACAAAAGTGAAATGAATTGTGTAAGTGGCAGTGGGGAGGTTGAAGAAATTTGGTTGGTCAAG
GCCAACCCACTGCACTGTATTCCTTTCCATGAGTGCTTATTTGCCCTTGGCACATTCACATGTT
GAGCTTGGACCCACATGTAATTGAGAGAATGAGGGACGTGCATATCAACTTTTAGGGGCAAATA
AGGTTCTAACATTTTGGTTTTTTATTGTTCCATCTGTAACTTTTAGATGCCCTGGTAAGAGTGT
ATCATACAATAATTTGTAGTGTACGATCCTACATACATCTAGCACAAAAATATCTTTTTTCTTA
ATTTACAATTATCCGCTAACATACATAAGGGCATTTAGATTTCTCGTAAAAGATATTTTTCATG
TTATATATATATCATAAATTCTCTAGGACATAATTATATATACAAACTAAATGAAAGTTATGTA
ATGGAAATGGACTATGATCGTGTCCAAAATGACTAGTATAACCAAACAGATAGAGTATGTCATA
AACAAATTGAATAGTAAAAACTGTTTTAGCAAGCTTACAGATGTTGCATTCTTGTATGGTCCTA
TATTTGTGCAGCTGCTACTGAATTTAATGAGTGGAATTAGAGCAAACGGCAGCACAAATGATAG
TACAATCTGCATCACAAAAAATCACATTACAAAATATATCATAATTATTACACTCGTTTAATCT
ATGGATTTTAAAGTTCCTATTAGTGAAATATAATATGTTTTATTCAACATTGTTTGAATTTTTG
TGTCATTGTGCCTATACCTAGCTTATGTTAGTTGATAAGAAGAGATTATCAAGAGAAATTACCG
CAGCTATGTTGATAATTCGATGCACTCGTAAAGTACCACCAATGCTGCAAATTATCAAACTAGG
TAATAAGGTGAAACAAGGAGCAACAAGATATATGATGCACTTTCTCATTCCGGAGAAGCCCTGT
AACAACATTTGGTAAATCTTGCATGAAGAAATTTAGGGAGGAAAAAAATACAGAAAATCCCCAT
TTGGATACTGATATGAAACTAGAGCTTGGCCAGATTTCTATCTATTACCAGTTGTAACTAAATA
TTTTAACACAGAAGTTACATTTCAATTTTTCTAAGCAAAGTTACATTTCAAATTCAGTAGGCAT
GCAATTAGCTCGAAATATTATTTGGTAATATTGAGATGATACATCTTCTGAAGGTATGTACTAC
TAGGTTTATCCTTGAGGCCCTAATCTAATCTACTCCAGTAATTAGGTAAATGTACCTGCATGAT
GTATTGGCCAGCATAACTCGTAGCCACCATGCAGCTCTGTCCAGAAACTAATAAGGCCACACCA
TACACAGTTGAACTTGATTTTCCCAAAATATTCTGCATCACAAACATATCAAAGATAGAGAATG
AGGAAGAACTAGTAAAATGGTACACTTTACTAGTTTAGGTTTCCGTTTATATAATTTTGTGGCC
TGGTGTTTCCTTTTAGTTGTGAAACATGTATACAGTAAGATTACTGCATGTATTGCTACACGTT
CAGTATTGCTATTTAGCTCCACAATACTAAAATACTGTCAGAAGTCAGAACCCCCTAAGGCTTA
TAGTTTTCAAATGTAAGGTCAATGACATCCTAAAAGTGTTCTATTGAATACAAACCTTGAGTAG
TACATAAGTTGAATTCAATGTTAGACTGCTGCACGTGCTTGTGTCGGCAAATGAGAGATTGTTG
GCACATATAGTACCAGATATTGATACAATAGCGACATTTACAAGTAGTGCAATGAACAGAGCTA
ATGCATTCTCAAGCAAGAAGAATGTAGAAGCATCCTGCAAGAAAGTGAATTCAAATTATATTAC
GAAGAAATAATGACTGTTTGAACAGAAATATAAAGAGCTAGAAAAAGGGAAAAAAAACCTCCTT
TTGAGGATTGTCATAGACTTTCTATAGAATACTGAAATACTGAAATTATTAGGTAGAGTTCATT
GTACTTAAAAATAGAGTTTTTCATGTTATATATGCTTATTCATTCATGGTTGAAATTCCTCAAT
AATAACATGAAAGTAAACGAAAACTTTTGTTCAAATATGCTATGTCTCATACGAAAATGAATAA
TCTAGAGGTACTGGTATAGAATTATAGCCCATATACTAAGGGGCACTGGACAGACAAAATCAAC
ATCAGTTTAGAGAAAAAAGTAAAAAGAAGTAGCCTATTCCAGAGGTTAAAAATTAATTTTAATT
TTAACATAAAAAATATCCTTTTACCTTGCGTCCTTTGGAAGTATATGGCATTTTTCTCGTTAGC
ACCAAAGAAGAATGTAGGAAGAGATTATGCCTAATGTTATAAAAGAACAGAGCAAGTTAGTGAA
ATATACCTTTTGCTTTACATCTGACGGGGTAGCCACAATAATACCTTTTAAAGAGTGTGAAAGA
CCTTTCAAAGGTTTTCTTTTATATAACAGATATATAACTTTTAAATTAGTAAAACCTGAATTAT
AATCGTTAACTAATTGAAAAAAAAATGAAAATAATGATGTACAACTAAAAAGTAGTGGCAATGA
AAAAGAAAATTCATTTGAATTTTCAGAGACAAAAGTATAATCATAGTTCTAAGATAATCATTAA
AATCATTTAATGTGGGAGTGATACTTACGGAACAACAAGAGAACCAAACATAGCAACCGCATCT
GAAGTAGAATAATCCCCTTTGGGCCTTGGGATAAAAAGCCCCTTAATTACCCCACCAGCAGGAG
GATTAACTTTGCCAAGTTCCATAAAAAAGCAAGTAGCCATCACCAACATAAGAACTGATATAGT
GAACTCCATTTTCCGAGC
Conservation Information
Conserved circRNAs osa_circ_001848
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021