Detail information of BGIOSGA001567_circ_g.1


General Information
CircRNA Name BGIOSGA001567_circ_g.1
ID in PlantcircBase osi_circ_009532
Alias Chr01:18309046_18310226(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 19200533-19201712  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA001567
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001567_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA001567-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACCCCACCAGCAGGAGGATTAACTTTGCCAAGTTCCATAAAAAAGCAAGTAGCCATCACCAA
CATAAGAACTGATATAGTGAACTCCATTTTCCGAGCccttgagtagtacataagttgaattcaa
tgttagactgctgcacgtgcttgtgtcggcaaatgagagattgttggcacatatagtaccagat
attgatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGAGTAGTACATAAGTTGAATTCAATGTTAGACTGCTGCACGTGCTTGTGTCGGCAAATGA
GAGATTGTTGGCACATATAGTACCAGATATTGATACAATAGCGACATTTACAAGTAGTGCAATG
AACAGAGCTAATGCATTCTCAAGCAAGAAGAATGTAGAAGCATCCTGCAAGAAAGTGAATTCAA
ATTATATTACGAAGAAATAATGACTGTTTGAACAGAAATATAAAGAGCTAGAAAAAGGGAAAAA
AAACCTCCTTTTGAGGATTGTCATAGACTTTCTATAGAATACTGAAATACTGAAATTATTAGGT
AGAGTTCATTGTACTTAAAAATAGAGTTTTTCATGTTATATATGCTTATTCATTCATGGTTGAA
ATTCCTCAATAATAACATGAAAGTAAACGAAAACTTTTGTTCAAATATGCTATGTCTCATACGA
AAATGAATAATCTAGAGGTACTGGTATAGAATTATAGCCCATATACTAAGGGGCACTGGACAGA
CAAAATCAACATCAGTTTAGAGAAAAAAGTAAAAAGAAGTAGCCTATTCCAGAGGTTAAAAATT
AATTTTAATTTTAACATAAAAAATATCCTTTTACCTTGCGTCCTTTGGAAGTATATGGCATTTT
TCTCGTTAGCACCAAAGAAGAATGTAGGAAGAGATTATGCCTAATGTTATAAAAGAACAGAGCA
AGTTAGTGAAATATACCTTTTGCTTTACATCTGACGGGGTAGCCACAATAATACCTTTTAAAGA
GTGTGAAAGACCTTTCAAAGGTTTTCTTTTATATAACAGATATATAACTTTTAAATTAGTAAAA
CCTGAATTATAATCGTTAACTAATTGAAAAAAAAATGAAAATAATGATGTACAACTAAAAAGTA
GTGGCAATGAAAAAGAAAATTCATTTGAATTTTCAGAGACAAAAGTATAATCATAGTTCTAAGA
TAATCATTAAAATCATTTAATGTGGGAGTGATACTTACGGAACAACAAGAGAACCAAACATAGC
AACCGCATCTGAAGTAGAATAATCCCCTTTGGGCCTTGGGATAAAAAGCCCCTTAATTACCCCA
CCAGCAGGAGGATTAACTTTGCCAAGTTCCATAAAAAAGCAAGTAGCCATCACCAACATAAGAA
CTGATATAGTGAACTCCATTTTCCGAGC
Conservation Information
Conserved circRNAs osa_circ_001851
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021