Detail information of Os01g0503400_circ_g.1


General Information
CircRNA Name Os01g0503400_circ_g.1
ID in PlantcircBase osa_circ_001848
Alias Os_ciR2714
Organism Oryza sativa
Position chr1: 17454390-17458770  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os01g0503400
Parent gene annotation Similar to (Rice Genome Annotation Project) metal transporter Nr
amp6. (Os01t0503400-01);Similar to cDNA clone:J013164K10, full i
nsert sequence. (Os01t0503400-02);Similar to OsNramp1 (Integral
membrane protein). (Os01t0503400-03);Similar to (Rice Genome Ann
otation Project) metal transporter Nramp6. (Os01t0503400-04);Sim
ilar to cDNA clone:J013164K10, full insert sequence. (Os01t05034
00-05)
Parent gene strand -
Alternative splicing Os01g0503400_circ_g.2 Os01g0503400_circ_g.3 Os01g0503400_circ_g.4 Os01g0503400_circ_g.5
Support reads 4
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0503400-01:4
Os01t0503400-03:7
Os01t0503400-05:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACCCCACCAGCAGGAGGATTAACTTTGCCAAGTTCCATAAAAAAGCAAGTAGCCATCACCAA
CATAAGAACTGATATAGTGAACTCCATTTTCCGAGCcttttctattcataaatgtacacctaaa
tcttcctgcttctcttgtatttgtatgtgttgaacttcaatctcaccagaaactgaattggtgg
ggaatgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTCTATTCATAAATGTACACCTAAATCTTCCTGCTTCTCTTGTATTTGTATGTGTTGAACT
TCAATCTCACCAGAAACTGAATTGGTGGGGAATGGATCTGAAAGGTTAACTTTTCTGAAAGCCA
AGTAGATCAGAGCAGCAATATAGGCTGCCATGAAAGGGAAAACAAGGCTGCTAATTATTGCATT
AACAACCCTTGGAAGGTCGCTATGAACAAGCCAAGCGACAAAGCTAGTACAGAAGAAATAAATA
TTGATTCCAATAATCACCAATGACAGTATCCACGCGATTCGGATAATCTACATAAAAGAGTAAA
ATTCCCAAGAGTTAAGAAGAATGAGTTCAATTTGATGACAAATGTATGCCATTTTAAGACAACA
CAGGGAATAATGAAAACTATGGTGTTATTGAGGAAGTAAAAGTTATTCTATGCAATAATGCAAA
TTATGTTGAAGATTTCCGATTATCTAGTAATTAAATGGAAATAATTCTTCAAGTAACTGTGATT
CATTTGAAGTAAAACCATTGTCTAAAAATATGGATGCAGAATATAATAACACAACAAGAAACGT
TACTACCTTGAAATTACTCTCACTCTAGAATTTGAACCATAATTATATACTCCAATGTTTACTG
AAACACCATGCTATGAGGTAATTTTACAAATTGAAAGCTCTAACATAGTAACATGCATTCGTGA
TCAGCCTACAGTTCTAGTTGAGATTTCAAATCTCATATATTCACTCTTACAATGGGATATATGT
AACGCCCATGTTCCAACATGCACATGAACCTAGACTTGATACACCAGAACTCTACACATGGATA
GCCATATAGTAGTTCTTAGACTATCATAACAAAGTAATTAAATTATATGTTGCTACATTTGGTC
CCTAGTTGATATAGTGTTTCATTCTAAGAGTATAACTATGAAAGAATTACCCATAAATCATTTT
GATATGAATGAAAGACATAGATTTGCAAATATATTTCAACCATAGAGTATCAGACAGGGAAGAA
CCAACAATCACCACTGTCTACCAACTCCATTTTATGCAAATAAAGATATACCTGGCTGGAACTA
GAATCTAACATTATTTTTTCTTTCTGTTGCCATCTATACACTAGCTCGTATTTGCACCCCTTTT
CTAAAAAGCATTGGCATGTTATTAAGTGGAAAAATATATTATATATATATGAGAGATGCTAATT
ATTATTTATCCAATGATTTTATGGTTTACATGTTGGCACATAAAAATAGCAGCAGGGACATCAA
TTTATCAATAAGAGAAGCTGGGGAAATATTGTGTGTCAAACTCAATGCAAAGTGGACACTGAGG
AAATGGGGGTATGTGCACAAAAGAAAAATGTTCATGAAAAGGGGACTATCATGCTTATAGCTTC
TATTTACAACTGTTTAGAAAAGAGGAAAAGAGTCTGCTAATTAGTGTTTTTTCCCAGCACAAAC
TACTTTAGAGTTGTATAGTTACCAGTGGTAAGTAAGGCGTATAAGTTATTTACATATGTACAGC
AATAGCTGGTCACAAAAGTGAAATGAATTGTGTAAGTGGCAGTGGGGAGGTTGAAGAAATTTGG
TTGGTCAAGGCCAACCCACTGCACTGTATTCCTTTCCATGAGTGCTTATTTGCCCTTGGCACAT
TCACATGTTGAGCTTGGACCCACATGTAACTGAGAGAATGAGGGACGTGCATATCAACTTTTAG
GGGCAAATAAGGTTCTAACATTTTGGTTTTTTATTGTTCCATCTGTAACTTTTAGATGCCCTGG
TAAGAGTGTATCATACAATAATTTGTAGTGTACGATCCTACATACATCTAGCACAAAAATATCT
TTTTTCTTAATTTACAATTATCCGCTAACATACATAAGGGCATTTAGATTTCTCGTAAAAGATA
TTTTTCATGTTATATATATATCATAAATTCTCTAGGACATAATTATACATACAAACTAAATGAA
AGTTATGTAATGGAAATGGACTATGATCGTGTCCAAAATGACTAGTATAACCAAACAGATAGAG
TATGTCATAAACAAATTGAATAGTAAAAACTGTTTTAGCAAGCTTACAGATGTTGCATTCTTGT
ATGGTCCTATATTTGTGCAGCTGCTACTGAATTTAATGAGTGGAATTAGAGCAAACGGCAGCAC
AAATGATAGTACAATCTGCATCACAAAAAATCACATTACAGAACATATCATAATTATTACACTC
GTTTAATCTATGGATTTTAAAGTTCCTATTAGTGAAATATAATATGTTTTATTCAACATTGTTT
GAATTTTTGTGTCATTGTGCCTATACCTAGCTTATGTTAGTTGATAAGAAGAGATTATCAAGAG
AAATTACCGCAGCTATGTTGATAATTCGATGCACTCGTAAAGTACCACCAATGCTGCAAATTAT
CAAACTAGGTAATAAGGTGAAACAAGGAGCAACAAGATATATGATGCACTTTCTCATTCCGGAG
AAGCCCTGTAACAACATTTGGTAAATCTTGCATGAAGAAATTTAGGGAGGAAAAAAATACAGAA
AATCCCCATTTGGATACTGATATGAAACTAGAGCTTGGCCAGATTTCTATCTATTACCAGTTGT
AACTAAATATTTTAACACAGAAGTTACATTTCAATTTTTCTAAGCAAAGTTACATTTCAAATTC
AGTAGGCATGCAATTAGCTCGAAATATTATTTGGTAATATTGAGATGATACATCTTCTGAAGGT
ATGTACTACTAGGTTTATCCTTGAGGCCCTAATCTAATCTACTCCAGTAATTAGGTAAATGTAC
CTGCATGATGTATTGGCCAGCATAACTCGTAGCCACCATGCAGCTCTGTCCAGAAACTAATAAG
GCCACACCATACACAGTTGAACTTGATTTTCCCAAAATATTCTGCATCACAAACATATCAAAGA
TAGAGAATGAGGAAGAACTAGTAAAATGGTACACTTTACTAGTTTAGGTTTCCGTTTATATAAT
TTTGTGGCCTGGTGTTTCCTTTTAGTTGTGAAACATGTATACAGTAAGATTACTGCATGTATTG
CTACACGTTCAGTATTGCTATTTAGCTCCACAATACTAAAATACTGTCAGAAGTCAGAACCCCC
TAAGGCTTATAGTTTTCAAATGTAAGGTCAATGACATCCTAAAAGTGTTCTATTGAATACAAAC
CTTGAGTAGTACATAAGTTGAATTCAATGTTAGACTGCTGCACGTGCTTGTGTCGGCAAATGAG
AGATTGTTGGCACATATAGTACCAGATATTGATACAATAGCGACATTTACAAGTAGTGCAATGA
ACAGAGCTAATGCATTCTCAAGCAAGAAGAATGTAGAAGCATCCTGCAAGAAAGTGAATTCAAA
TTATATTACGAAGAAATAATGACTGTTTGAACAGAAATATAAAGAGCTAGAAAAAGGGAAAAAA
AAACCTCCTTTTGAGGATTGTCATAGACTTTCTATAGAATACTGAAATACTGAAATTATTAGGT
AGAGTTCATTGTACTTAAAAATAGAGTTTTTCATGTTATATATGCTTATTCATTCATGGTTGAA
ATTCCTCAATAATAACATGAAAGTAAACGAAAACTTTTGTTCAAATATGCTATGTCTCATACGA
AAATGAATAATCTAGAGGTACTGGTATAGAATTATAGCCCATATACTAAGGGGCACTGGACAGA
CAAAATCAACATCAGTTTAGAGAAAAAAGTAAAAAGAAGTAGCCTATTCCAGAGGTTAAAAATT
AATTTTAATTTTAACATAAAAAATATCCTTTTACCTTGCGTCCTTTGGAAGTATATGGCATTTT
TCTCGTTAGCACCAAAGAAGAATGTAGGAAGAGATTATGCCTAATGTTATAAAAGAACAGAGCA
AGTTAGTGAAATATACCTTTTGCTTTACATCTGACGGGGTAGCCACAATAATACCTTTTAAAGA
GTGTGAAAGACCTTTCAAAGGTTTTTTTTTTATATAACAGATATATAACTTTTAAATTAGTAAA
ACCTGAATTATAATCGTTAACTAATTGAAAAAAAAATGAAAATAATGATGTACAACTAAAAAGT
AGTGGCAATGAAAAAGAAAATTCATTTGAATTTTCAGAGACAAAAGTATAATCATAGTTCTAAG
ATAATCATTAAAATCATTTAATGTGGGAGTGATACTTACGGAACAACAAGAGAACCAAACATAG
CAACCGCATCTGAAGTAGAATAATCCCCTTTGGGCCTTGGGATAAAAAGCCCCTCAATTACCCC
ACCAGCAGGAGGATTAACTTTGCCAAGTTCCATAAAAAAGCAAGTAGCCATCACCAACATAAGA
ACTGATATAGTGAACTCCATTTTCCGAGC
Conservation Information
Conserved circRNAs osi_circ_009531
PMCS 0.098099627
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015