Detail information of BGIOSGA034174_circ_g.3


General Information
CircRNA Name BGIOSGA034174_circ_g.3
ID in PlantcircBase osi_circ_009493
Alias Chr11:9472956_9480075(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 7691566-7698684  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA034174
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034174_circ_g.4 BGIOSGA034174_circ_g.5 BGIOSGA034174_circ_g.6 BGIOSGA034174_circ_g.7 BGIOSGA034174_circ_g.8 BGIOSGA034174_circ_g.9 BGIOSGA034174_circ_g.10 BGIOSGA034174_circ_g.11
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA034174-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCTAGTTCACCACACTCTTTATAAATGCTACCAAGTAGATGGTATGAATTTGACAAATTCGG
CGCGATCCGCACAACCTCATGTAATATAGGAATTGCcaactctgccggtgatgctattggcctt
aatccttgaaacacgctttctggacgttgttcagctaacactttggctctttcatatagaacat
tagttgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021