Detail information of Zm00001d041070_circ_g.1


General Information
CircRNA Name Zm00001d041070_circ_g.1
ID in PlantcircBase zma_circ_001383
Alias circ1717
Organism Zea mays
Position chr3: 94785720-94790667  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d041070
Parent gene annotation 5-methylthioadenosine/S-adenosylhomocysteine deaminase
Parent gene strand +
Alternative splicing Zm00001d041070_circ_igg.1 Zm00001d041070_circ_igg.2 Zm00001d041070_circ_g.2 Zm00001d041070_circ_g.3 Zm00001d041070_circ_g.4 Zm00001d041070_circ_g.5 Zm00001d041070_circ_g.6 Zm00001d041070_circ_g.7 Zm00001d041070_circ_g.8 Zm00001d041070_circ_g.9
Support reads 6
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d041070_T001:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCAACATTGTCTACTGCATGCGGACAGAGAATATTGAGTCTGTTATGTGCAATGGTCGGTGG
ATCATGAAGGATCATAAAATCATGAATCTCAATGAGgcatattgcagaaataccatatgaaaat
caacttatacttcggaccaaaggaattgatcatggcacagtgacatatttagacaaaattgatt
tcctgagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCATATTGCAGAAATACCATATGAAAATCAACTTATACTTCGGACCAAAGGAATTGATCATGGC
ACAGTGACATATTTAGACAAAATTGATTTCCTGAGGAGTAATTTACTGGCTGCCCATTCTGTTT
GGTTGAATGTACCTGAGGTGAGTAAACTTTTTCACAATCAATTGTTGCCTTGCACATTGTCTAC
TCTGTTTGTATCCTGAGAACATATAGTAGTTATCAAATATACAAAATAGCCTAGAAAATGTTCT
GGTTCTAAGAATGCCATGGCTTTAGTTTTTATTCTGTCCCAAAATCTAGGTGGGGTGGGGTGGG
GTGGTGGTGGTGGTGGTTAGGTGCTATGGATAGTTTACTGGAAGTCTGGAGGACGAGGTCAATG
GCATCCTGTTGGTGCCATGATTGCAGGAGGAAGATAGTGGGCTCGGTGGATTACAGCAGAGATA
GAAGAACCGAGGATATTGGCAACGAAGAACAAAAATGGTACAAACAAGAAATATACATAGATCA
CGTCCTTGTTCCCCAAAACAGAGCTCCTTATAAAGGTACTCAGGACTAGTAGTACATGGCCTGA
ATCTTCTAGTCTGTGCATGTTACAATTAAATATTTATTCATGCTTTACTTCCAGGACTAGTAGT
ACATGGGCCCAATCTCTTAGGCGGAAGAGTCGCTGAGGGCGCCAACGGCGGCCGTCTTGACGGC
GTCGCCCTTGGTTGACTGTGACGGCGTGGGGGACATGGTGCCAAGTGGAGGGGGAGGAGAGTAG
GTGCAGCGCGGCAGAGGAGGCCAGCGCACAGATGTAGCACGGCAGAGGGCCAGCGCGCTAGGGC
AGCGGAAGAGGGGGGAAGCTGAGGTGAAACCTGGACTCGTGATACCATGAAAGGAGATATGGCT
TGGAGAATAGTAGATTGACTATAGAGGTACAAGGGATGTACAATATATAGGCACACGGATCATC
TAAGGTTTATATAAAGTACCCAACTAATAGAGATCCTTGCCTAATTTATGATCAACTACCATAA
ACACCAAGACACATATTGCATGCCTGATCACCTTAATCTAACACATATGATAGGCCTGATCAGC
CCAATCTAACACATATGGCAGGCCTGATCAGCCCAATCTAACAGATTTTAAAGGAAAGGGGATC
TAATGGAGATGCTATAAGTCCCAACAAAACCAAACTGCTCAGTTCAGCAAAACAAAAACTAACT
TGAATTCTGCTGCACTCACAAACTGATGTGTTTCTTCATATGGAAGGTTATCTCCATGTACATC
CATTCATCTACATCATGCTGAAATCCTCATGACAGTGCTAAAACATCTATATAAGAAGTTTTTT
TTGCCACAGTTGGATCTGTATCTAAAGTTCTAAATCTCTTTTGTTATATGACATTTTTTTTTGT
CAATACTAGATCGCAAAACACAGCAATTTCTCCAAGTACAACTCATAGGTATGCCCTTCCATGA
TGGTTTCACTATATGATTTTCAAATTGCAGATAGGCTTTTTTTCAAAGGCTGGTGTTAAGGTTT
CTCACTGTCCTGCATCTGCCATGCGTATGTTGGGGTTTGCTCCTATTAGAGAAATGCTGGATTC
TGGTGTTTGTGTCTCCCTTGGTACAGATGGAGCACCGAGCAATAATAGAATGAGCATTGGTATG
CTTCAGAAATCCTCACAGAAAACATTTTTACAAGCATGTGTGAGCTTGGGCCATGATTTAAAGA
GGAATTGTTATGTTCCAGAAGAATATAGATCGGAGAACCTAATTGACTATTCTTACTTTGCTTC
AACCAAATAATTATCTCATGTTCACTTTATAGAATGATTATATTCTTGTGAAGATATTCAGTAT
TTCATTAAAATGTCATCGCTAGAACTTTCGAAACCACATTTATCTGTTTATTTTTGAAAGAAAA
TGGATTAACTCGGCCGGGGAGGGAAAGACCGCCCTCCCGGTATTATGAAAGAAAATGGATTATC
AGGTTGTTATCATGTTATGTAGTTCAGCTGCGCTGTTATGTAAAGAAACGCTGAATCAACTGAA
AAAAAGACATGGGAAAAGATATTTTACTGATTAAATGAGTAAAAATATACTATTTGGGCATCCA
TTTGATCAGGCTTGCTTTCTTTAATCAAATAAACCAATTCTCCTCCTTTTATTTTAAAAAATAT
GTCAACCAGTTACTGTTGGAATGGATCACACAATTTACATATGCAATTGAACTTTGTACTTCAT
CCTAGGACATACAAACCTTATATCTTTAAAATTTGGGGCTATTGTGTTCTTGCCCCCACTTTGA
TTTCTAATTGTGATTTTGCCCTCACTTTTTTCGGATGAAGTTGAAAGTTTTCCCTACTCTGGAA
GAAAAGTGAGGATAAAATCACAAAATAGGGTAACTTTTCAACTTCATCCGAGAAAAGTGGGGGC
AAAATCACAAAGTTTGAAAAGTAGGGGCAAAATCACAATTGAAAATCGAAATGGGGGCAAGAAC
ACAATAGCCCCTTAAAATTTTGATATGCTGTGGTTAATTTTACATTGACTACCTTGGGTTGTAC
AGTGGATGAGATGTACTTAGCGTCCCTAATTAACAAAGGTCGTGAGGCATATATCAGTGGAACA
ACAAACCCAACTGCTCTTCCCGCTGAGACGGTGCTGAAGATGGCTACTATTAATGGTGCAAAAG
CAGTTCTGTGGGACAATGAAATAGGTTCGCTGGAGGTTGGCAAAAAGGTGATGCTCTCAGTTGC
TAGTTTGTTCATGTATAGCTCTCAATAACTTTGGTCCATATATTTCAGAGGTTGATAAATCTTA
TTTTCTTCATTGTAAAGCCATTGAAAGTAGCCTAGAGGGGGGGGGGGGTGAATAGGCTACACCT
AAATTTTTCACTAAAAACTTCGAGATAGTGTTAAATTCAAGTTGCACTGGTGCAAACTGGTTCA
GCTGATTTTGTTTAGTTTACAGCTGAACAAGTTTGAACCTGCTCAACTTAGATTAGATAAATAG
TTAAACAAGTGTGACAAAGTAATGAGAGATTTTTGCTTAAGACTTGCCCTAGAGATAATCCACT
CAAATGGGTGACAAATCGATGTGAATTGGTTTCACACGATTTGCACACAATATAATCAAGTATG
AACTAACCAACAATTTAAAGCGCTTTCCAAGAGCACACCAAGAACACACGATTTAACCCGAGGT
TTGGCAACTACCACAAACGTGTCTTACTCCTCGTTGAGGAGCCCACAAAGGGCCGGGTCTTTTC
CAACCCTAATCCTCCACAAGCCGACCACCAAGGTCAAGGCAATCTCTTCTCAAATTGGCTCAAC
GAGCGGGTGATACAAACTTCTTGGGGTCGTCCACAAATTTGGAGACTCCCAAGCAACCTCAATC
CGTCAAGGAACTCAAGGTTCCAAGAGTAACAAATCCGCACAAGATTCGAGTTTGCGATGAGCTC
AAGAGATGAAGAGAATCGAGATGAAAACAACGAGTTAGACCGACTTCACCTCACACTAAGGGTC
CTTCAATCAATTGAAGGAGATGCGATTTTGGATGTGAGAGGTGGATTGAATGCTCTTGTTTGAG
AGTTGGTCAGCCAAGAATTCGTGGAAAGGGCAGAAGTGAATGAAGAGAGAGAGTGTGAGGCTAT
ATAAAGGAGCCCCCAAAAGCTGGCAGCCGTTGGGGAAATCTGACTGAAAACCGGTTGAACCGGT
TCTGAAACCGGTTGAACCGGTTTCCACCAGGGTGGATCTCGGTTCACTGGCTGACTGAGCCGGA
GAGTGGACCGGTTCCAAATTCGGCTGAACCGGCCCAAAAATCGGTTGAACCGATTTTCCAACAG
TCTGTACACGACTTTTTCTGACAGGACTGACTGGCAGACTGGCAGGTCAGAAAGTGGCAAAGTG
AACAGTGCAGAAACCGGTTGAGCCGGTTTTGAGTCCGGTTGAACCGGTTTTTTCAAACTGGCTA
ACAGATTTTTAGAAAACTGAAGAGAACCCTGGGGAAATCTTAGTGGGAAGTAAAAGTGGTTTTT
CCAAGAGCATTCATGATCTAGTAAAATGTTATCTTAGAGGATTCGAAAAGGTTTGGACTGAGCT
CATCGCATTTACTTACTCAACTATTGCGGATCCCTCTTAATTGAACAACGATTCCTATGACTCA
AGAATTGTAAAAACAAATTGCCGTTGTTCCCTAGCACTTGAAGCACGCTATATAATGTAGAATT
TTAATCCGCTGTGCTTTTTCATTTGCGTACATATATGCTCTGTGCTTCTCCTGTCTGTAGAATA
ACTGTATACATACTAGGAGAAAACTTGTTAGAATCTCTGTTTGTTTTGTCATTTAATCACCAAA
ACCCTCAGTTAGGGTTGATTGCACTTACAACCATGTTTTTTTGGTTGTACTTTTTTTTGAAGTC
AGTAGTGGGTTGATCAGCTTACTTATCCTATCAAGCTCAAATTCATTTTGACTCTTAAATTATA
TTATATGGTTTAGTTGGCCCATGCAAAGTATCTTGTTTGTGTAGGCGGACTTGGTGGTGGTGAA
TCCATTTACATGGTCCATGGTCCCCTTACATGACAGGTGTGCATTACTATGATTTATTTATTTC
TTAAATGTTTGAATAACTACTATTTTTATGATTGGGTTAGCGCTGTTTTTTTTGCGTCAATGTT
TACACTCTCGTACTTTTTTTGTGTCTACTCCATTTCACAATTTCTGTATGTAGCCTGTTAATCT
TGTTGTTACCTGATATATATCTAGTTAGTTATCTAGCCGTGCTTTTGGGCCTTTGTTTCATTGG
TTGTTTGGCATAACACTTACCTCTCCGGCTCTCCCTAATGCACAGCATTGCCAACATTGTCTAC
TGCATGCGGACAGAGAATATTGAGTCTGTTATGTGCAATGGTCGGTGGATCATGAAGGATCATA
AAATCATGAATCTCAATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.00416712
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b