Detail information of 1_circ_ag.2


General Information
CircRNA Name 1_circ_ag.2
ID in PlantcircBase ath_circ_001692
Alias NA
Organism Arabidpsis thaliana
Position chr1: 3059300-3064289  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT1G09470_circ_g.1 AT1G09470_circ_g.2 AT1G09470_circ_g.3 1_circ_ag.4 AT1G09470_circ_g.5 AT1G09480_circ_g.1 1_circ_ag.3 1_circ_ag.4 1_circ_igg.5 AT1G09490_circ_g.1 AT1G09530_circ_g.1 AT1G09560_circ_g.1 AT1G09560_circ_g.2 AT1G09570_circ_g.1 AT1G09570_circ_g.2 AT1G09580_circ_g.1 AT1G09590_circ_g.1 AT1G09590_circ_g.2 AT1G09620_circ_g.1 AT1G09620_circ_g.2 AT1G09620_circ_g.3 AT1G09620_circ_g.4 AT1G09640_circ_g.1 AT1G09640_circ_g.2 AT1G09640_circ_g.3 AT1G09640_circ_g.4 AT1G09640_circ_g.5 AT1G09640_circ_g.6 AT1G09640_circ_g.7 AT1G09640_circ_g.8 AT1G09640_circ_g.9 AT1G09640_circ_g.10 AT1G09660_circ_g.1 AT1G09660_circ_g.2 AT1G09660_circ_g.3 AT1G09660_circ_g.4 AT1G09660_circ_g.5 AT1G09660_circ_g.6 AT1G09660_circ_g.7
Support reads 5
Tissues aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGTCTGCGTTACCGGAGCTTCCGGCTACATAGCGTCTTGGATTGTCAAGCTTTTGCTCCTCC
GTGGCTACACCGTCAATGCCACTGTTCGAGATCCAAcggacaggaagaaaacagaacatcttct
tgcacttgatggtgcaaaagaaagactcaaattgttcaaagcagatcttttggaagaatcttct
ttcgaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGACAGGAAGAAAACAGAACATCTTCTTGCACTTGATGGTGCAAAAGAAAGACTCAAATTGTT
CAAAGCAGATCTTTTGGAAGAATCTTCTTTCGAACAAGCTATTGAAGGATGTGACGCTGTCTTC
CACACCGCATCTCCAGTTTTCTTCACCGTCAAAGATCCTCAGGTTTTTCAACAACTTCAAATTT
GTTGTGGTGAATCCAATGCATGTTAATTTTAACTACTCACTCTGTTTCGAATTCATCCAAGTTT
TAGTTTTTTCACACATGTTAAAGAGATTTCTAAAGTGACAATTATAACCTTATGTTTATTAAAT
GTTTCTTAAGTTTTCTTTAAATAATAAATATCATAGGGGCAAAATTGAGAAGAAAAAAGAACAA
TAACTACACCTAAAAATTTGAAAACACCTTAATTGAAACATTTTTTTAAAAAAATCTTTTGCTT
TCGACGCCGTAAAGAAACTTATCAAAATGTGTGTGTTTTTTTTTTTTAATAATTATCAGACTGA
GCTGATTGATCCAGCCTTAAAGGGTACTATGAACGTCCTTAATACATGCAAAGAAACTCCCTCT
GTCAGAAGGGTCATTCTGACATCATCCACGGCTGCGGTTCTCTTTCGTCAGCCACCTGTGGAGG
CAAGCGATGTGGTGGACGAGACTTTCTTCTCCGATCCAAGTCTATGCAGGGAGACAAAGGTTCT
TAAGTTTTGTTGTGATTTGTGAACATATCAATTTCGAGATTTTGGAATCTTTCTTACACTTTTC
TTTTTCTTCTTTAGAATTGGTATCCACTCTCCAAAATTTTGGCAGAGAATGCAGCGTGGGAATT
TGCCAAAGACAACGGAATCGACATGGTCGTGTTGAATCCAGGATTTATATTCGGACCACTCTTG
CAACCAACTCTGAACTTTTCGGTAGAGCTAATTGTGGATTTCATAAATGGTAAGAATCCTTTCA
ATAGTAGATTCTACAGGTTCGTGGACGTAAGAGATGTTGCCTTAGCTCATATCAAAGCTCTGGA
GACTCCTTCAGCCAATGGCAGATACATCATTGATGGTCCAATTATGAGTGTAAGTGACATTATA
GATATTCTGCGGGAGCTACTTCCAGACTTGTGTATTGCTGATACGTGAGTTCTCTTTCCCGCTA
CCTTTACTTATGAAGTCCATAAATTTAATGAAAGATTTTGAAAAACTTACGTTCGATTTTAATT
TTTGTAGGAATGAAGAAAGTGTGATGAATGAAATGTTATGCAAAGTGTGTGTGGAGAAAGTGAA
GAATTTGGGAGTTGAGTTCACTCCAATGAAATCGAGCCTTAGAGACACTATTGTTAGCCTCAAG
GAGAAATGTCTTTTATGATTCTGTTCTTATATTTATAACTACTGTGTATTTTATATTTTTGTTA
GTATAACTAATTCAAGTGGTTTAAGCTGTTAAGGCTCTTTAAGATCTAAGCATTTTATAAATAA
TGATAGATAATTATTGTTTAGGCTAAATTTGTCACTAATTAAGATTTGGATTCATGATTTATCG
ATAAAAATACATCGTGTAAACTAAGCTTAAATCACTAAACGTTTACTTGTAACGCTAGGTGATG
TCACCAAGTCAATTGGTACAAGGAAAAAACGAGTGGTCATATGACATTATGACCATAAGAATTC
AAACTCCCGTAATCCAATGGTTATGGATTCAATGATCAAGACTTGAACCACGTAATCCACCCTT
ATCCTTATAGAAGCTCATAAATACCACTAAAGGGACAGACGACGCTTAACCAGTAGTTGTCCAA
TAATTTACGCTCATAAATACCCTTATTTTTATACCTTAGATTTCTCTAATAATAACTCAGACAT
TGTAACAAAGAGGTGTATAATCTTAATCCTTCATACACTGGAGGGTACTGTCTAACTATTTTAA
AATGATCTAAAATGATTTCATCGCTAATTCAACGCCTAGAAAAGGCAACTAATATCAGCATCGA
CATGGAGACAATAATCTTGAAACCTGATTTGTCCCACAAGTTTTGGTTGCTAGAAAGATCAGCT
TCATGCTGTTTTTTTGCAGCCAATTGCTCGTTGAGTACTTCTTGTATTGCCATATCGTTTCGCT
CTCCCATCTAGCATCGCACAGAAAGAACAGCTCAAATTGGTACTGTATTCATAAAATTACTATC
CCTAGTAAAAGCAAGTGAGTTTACCTTTTGAAGTTTTCGAGTTTGGATGCGTGTTTCGCGTAGG
CAAAATTCTAACTTCAGCACCTTCTTCTTCAGCTCCTGATCAATTCTCCTTTGATTCTCCACCT
GATCCAGAAGAACAAAGGCTTTACTACATAAAACCAAAAATAAATCACAGAAATAAGAGATGCT
AAAGCATGTGTTGTTACCTGATCTTCTAATTCCTTTGTCTTAAACGTCCAATGAGCCGACATAA
TCTTCAGTTCATCTCTGAGAGTCTGAGTCTTGCAATATCATCATCTTTAGCCGTCAAAAGTTAT
TTAGCTTCGGAGTTACCGAGCCTAGGGCTTCGAATTTTGTATCATCTAAAGTAACGAATCCTTC
GCTAACCTACGCATCTGGCGCAGTAAGCTAACTTGCTAGGTTTGACTGTAGCGCGGCAAAATCT
ATTCGTTCAAAGTGTAGAAAGCCACGTGTGCATAGTGTTTATCGTTAGTGGTCGCACACTAATA
ATCTTCTTGTCATAAAATAATGTTGTTGTTCGTTTTATTGCCGCAGACGCTGCCGCTGCCGCAA
CCGCAGGTTTATTTGTTCGTTTTGACGCCGCTACGATAATTTTCATGTAATTCTTTTATTTACT
TTTCTAGTTATATTCTGAATATAAAAAAATGTAATTTAAATATATTTACATCCATAAAAAATAT
TTGTTTAGCATGTAATAGTTTTTAGCTTTTTTTGGTAAGGAGTAATAATTTTAAATATTAGTTT
TCTGAAAAATGCAGAAACGATTTTAAATACAAATGGAACAGGTAAAGGATTGGGATAAACCATC
TTTCCTAACAAAATCTGAACTCGTACAATATAGAATTCAGTCTTGTTTGATACAAAAAAATCAT
AAAAAGAACAAAGCAAGTGCAAAAATTCTTAGAAGAGAATGAAAAAAATGGAAACAACTCAATA
GCCACCTTTGAGATCGTTGACAACATTGGGAATGGGAGTGACAGTCTCCAAGGTCATACCTTCA
ACCATGAAACAAGGTTTAGGACCTTTAGGTTGTCTCTTAGTGCTAATAGTCTCACATCTAGCTT
TAGCAGCAGTCTTAAACACATCGTTTTGCTTCTTCCTGAGACTAAACTCATCATCACACCTTGA
CTGTTGCAGCCTTAAGCACATCGTTCTGCTTCTTCCTGAGATTAAACTCCTCATCACACCTTGA
CTGTTGCACATGCTCCACACGTACATGTATCCTCTTCCTTATAATTCTGTGCTTAATCTAAAAC
TCAACCCAAAACTCAAAATTAGCTCTCCAAGAGATTCAACTAAATGATAAACATCAAAGTCAAA
ATGAAAACATCACTAAGAATCATAGTAGATTGATTGCAAATTATACAAGTAGCAAAAGAAGGAC
CCAAGAAGAAAAGCTTGAAGCTTTCAAACCAATACTAATCACACATCACAAAATTCAAAACAGA
TAGCTCACACAAGACAATTAAACCCCAAATCAAAGAATCAAAATAACGTTCAAATCCTAATTTC
AACAATCAAAACTCTTCCAAACAGATGAGAATTTTGAGTAATCGAAACCTGTTTGTTGACTTCA
ACACCAACGGCACGCTTAGTGAGATTCCAGATACGACCAATACGACTATGGTAGAACTTATGAG
GAATACCCTTGTGAATAGCTCCATTAACCTTGACATCGACGTAATCGCCGACCTTGAAGGTTAT
GAGGTAAGTGGAGAGTGGAATATAACCCTTCTTCCTGAATGGTCTCGCGAACAGATCTCTTGTT
CTTCAGGGTCAACCAGAGAACTTCTAAAACAAAACCCATTACTTCGAAATCGCCGAGTTTAATT
CGAAATCGCTGAGCTTTACTTTTTCAGATCGAAATCGTGTAAAAGAGAAGAAAAGTTTCAGATC
GTGAATGTGTTAGGTTTTAGAGTTAGGTTTTATCGTGGGTTTCTAAATATGTTAAGGGTATTTC
TGTCATTTGGCATATTAATCGCAGTTTTTTAATTTTAACGCTGAATTTAATCAGCGTTTAATTT
TTTTCGCCGCATAACATTGCGTCGGCCGCAGCGTTTTGCCGCAGCTATCTGCGGTAGTGAAATG
AACAGTTTCATCTGCGTCTACCGCAGCTGCAACTACCTGCGGCGACGAAACGAACAGACTAAAT
ATAAATAAACATAAAAATTAAAAGCACAAATGAATTTTAGTATGTGTAATTATGTATAGTAGTA
ATTACTCATCAATCATCTTAAAAACCTTTTTTTCTGGTGATTTCTAGTTTTAAAGTTTTTACCT
ATGATTTTGTCTTGAGGATGTCTAGGCTTTACAATATATTGAAATATTTATACATTTAAAATAA
AATCTATAAAACTGAAAGAAAATAATTAATATTCTGAACTTCATTTTTTGCATTTTGTGTATAA
ATTAAAAAAAAAAAAAATTACTGCTACGTGATTTGTTGAAAAAATTAACACGTGGGGTGTTTTA
TTTTTGATTACATGAACTTGTGAACCTTGTTTCTGCTTACAAAAACTGAAGAGCCCATTTCAAA
CAAGGCCCATATTCTGATTGAGCGGCCCTATTTTACCAAACCACCTACTAATGAACACTCTCAA
GTCACCTCATTCGAGTTGGAAGTTCCCTTTAAAACAATTATTTTCAGACACAGAGAGACTCAGA
CAGGAGATATGAACTGCGGAGGAAAGGTGGTCTGCGTTACCGGAGCTTCCGGCTACATAGCGTC
TTGGATTGTCAAGCTTTTGCTCCTCCGTGGCTACACCGTCAATGCCACTGTTCGAGATCCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.669135273
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017