Detail information of 1_circ_ag.3


General Information
CircRNA Name 1_circ_ag.3
ID in PlantcircBase ath_circ_001693
Alias NA
Organism Arabidpsis thaliana
Position chr1: 3059807-3064874  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT1G09470_circ_g.1 AT1G09470_circ_g.2 AT1G09470_circ_g.3 1_circ_ag.4 AT1G09470_circ_g.5 AT1G09480_circ_g.1 1_circ_ag.2 1_circ_ag.4 1_circ_igg.5 AT1G09490_circ_g.1 AT1G09530_circ_g.1 AT1G09560_circ_g.1 AT1G09560_circ_g.2 AT1G09570_circ_g.1 AT1G09570_circ_g.2 AT1G09580_circ_g.1 AT1G09590_circ_g.1 AT1G09590_circ_g.2 AT1G09620_circ_g.1 AT1G09620_circ_g.2 AT1G09620_circ_g.3 AT1G09620_circ_g.4 AT1G09640_circ_g.1 AT1G09640_circ_g.2 AT1G09640_circ_g.3 AT1G09640_circ_g.4 AT1G09640_circ_g.5 AT1G09640_circ_g.6 AT1G09640_circ_g.7 AT1G09640_circ_g.8 AT1G09640_circ_g.9 AT1G09640_circ_g.10 AT1G09660_circ_g.1 AT1G09660_circ_g.2 AT1G09660_circ_g.3 AT1G09660_circ_g.4 AT1G09660_circ_g.5 AT1G09660_circ_g.6 AT1G09660_circ_g.7
Support reads 31
Tissues root, aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATCTTTTGGAAGAATCTTCTTTTGATCAAGCTATCGATGGTTGTGATGCTGTCTTCCACACT
GCTTCTCCAGTTCTATTCACTGTCACAGATCCTCAGactgagctgattgatccagccttaaagg
gtactatgaacgtccttaatacatgcaaagaaactccctctgtcagaagggtcattctgacatc
atccacgg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 342
Transcript exons: 3059807-3059841,3064151-3064289,3064707-3064874
ACTGAGCTGATTGATCCAGCCTTAAAGGGTACTATAGAGAGACTCAGACAGGAGATATGAACTG
CGGAGGAAAGGTGGTCTGCGTTACCGGAGCTTCCGGCTACATAGCGTCTTGGATTGTCAAGCTT
TTGCTCCTCCGTGGCTACACCGTCAATGCCACTGTTCGAGATCCAAGACAAGAAGAAAACAGAA
CATCTTCTTGCACTAGACGGTGCAAAAGAAAGACTCAAATTGTTCAAAGCAGATCTTTTGGAAG
AATCTTCTTTTGATCAAGCTATCGATGGTTGTGATGCTGTCTTCCACACTGCTTCTCCAGTTCT
ATTCACTGTCACAGATCCTCAG

Transcript length: 393
Transcript exons: 3059807-3059841,3064108-3064289,3064699-3064874
ACTGAGCTGATTGATCCAGCCTTAAAGGGTACTATATTCGAGTTGGAAGTTCCCTTTAAAACAA
TTATTTTCAGACACAGAGAGACTCAGACAGGAGATATGAACTGCGGAGGAAAGGTGGTCTGCGT
TACCGGAGCTTCCGGCTACATAGCGTCTTGGATTGTCAAGCTTTTGCTCCTCCGTGGCTACACC
GTCAATGCCACTGTTCGAGATCCAACTTCAGAGGACAAGAAGAAAACAGAACATCTTCTTGCAC
TAGACGGTGCAAAAGAAAGACTCAAATTGTTCAAAGCAGATCTTTTGGAAGAATCTTCTTTTGA
TCAAGCTATCGATGGTTGTGATGCTGTCTTCCACACTGCTTCTCCAGTTCTATTCACTGTCACA
GATCCTCAG

Transcript length: 493
Transcript exons: 3059807-3059841,3060080-3060187,3064114-3064290,3064702-
3064874
ACTGAGCTGATTGATCCAGCCTTAAAGGGTACTATAGAATTGGTATCCACTCTCCAAAATTTTG
GCAGAGAATGCAGCGTGGGAATTTGCCAAAGACAACGGAATCGACATGGTCGTGTTGAATCCAG
GATTTATATTCGGACGTTGGAAGTTCCCTTTAAAACAATTATTTTCAGACACAGAGAGACTCAG
ACAGGAGATATGAACTGCGGAGGAAAGGTGGTCTGCGTTACCGGAGCTTCCGGCTACATAGCGT
CTTGGATTGTCAAGCTTTTGCTCCTCCGTGGCTACACCGTCAATGCCACTGTTCGAGATCCAAG
CAGAGGACAAGAAGAAAACAGAACATCTTCTTGCACTAGACGGTGCAAAAGAAAGACTCAAATT
GTTCAAAGCAGATCTTTTGGAAGAATCTTCTTTTGATCAAGCTATCGATGGTTGTGATGCTGTC
TTCCACACTGCTTCTCCAGTTCTATTCACTGTCACAGATCCTCAG

Transcript length: 499
Transcript exons: 3059807-3059841,3060080-3060222,3064142-3064289,3064702-
3064874
ACTGAGCTGATTGATCCAGCCTTAAAGGGTACTATAGAATTGGTATCCACTCTCCAAAATTTTG
GCAGAGAATGCAGCGTGGGAATTTGCCAAAGACAACGGAATCGACATGGTCGTGTTGAATCCAG
GATTTATATTCGGACCACTCTTGCAACCAACTCTGAACTTTTCGGTAGAGTTCAGACACAGAGA
GACTCAGACAGGAGATATGAACTGCGGAGGAAAGGTGGTCTGCGTTACCGGAGCTTCCGGCTAC
ATAGCGTCTTGGATTGTCAAGCTTTTGCTCCTCCGTGGCTACACCGTCAATGCCACTGTTCGAG
ATCCAACAGAGGACAAGAAGAAAACAGAACATCTTCTTGCACTAGACGGTGCAAAAGAAAGACT
CAAATTGTTCAAAGCAGATCTTTTGGAAGAATCTTCTTTTGATCAAGCTATCGATGGTTGTGAT
GCTGTCTTCCACACTGCTTCTCCAGTTCTATTCACTGTCACAGATCCTCAG

Transcript length: 536
Transcript exons: 3059807-3059840,3060080-3060232,3064114-3064289,3064702-
3064874
ACTGAGCTGATTGATCCAGCCTTAAAGGGTACTAAGAATTGGTATCCACTCTCCAAAATTTTGG
CAGAGAATGCAGCGTGGGAATTTGCCAAAGACAACGGAATCGACATGGTCGTGTTGAATCCAGG
ATTTATATTCGGACCACTCTTGCAACCAACTCTGAACTTTTCGGTAGAGCTAATTGTGGGTTGG
AAGTTCCCTTTAAAACAATTATTTTCAGACACAGAGAGACTCAGACAGGAGATATGAACTGCGG
AGGAAAGGTGGTCTGCGTTACCGGAGCTTCCGGCTACATAGCGTCTTGGATTGTCAAGCTTTTG
CTCCTCCGTGGCTACACCGTCAATGCCACTGTTCGAGATCCAACAGAGGACAAGAAGAAAACAG
AACATCTTCTTGCACTAGACGGTGCAAAAGAAAGACTCAAATTGTTCAAAGCAGATCTTTTGGA
AGAATCTTCTTTTGATCAAGCTATCGATGGTTGTGATGCTGTCTTCCACACTGCTTCTCCAGTT
CTATTCACTGTCACAGATCCTCAG

Transcript length: 563
Transcript exons: 3059807-3059838,3060080-3060273,3064126-3064289,3064702-
3064874
ACTGAGCTGATTGATCCAGCCTTAAAGGGTACAGAATTGGTATCCACTCTCCAAAATTTTGGCA
GAGAATGCAGCGTGGGAATTTGCCAAAGACAACGGAATCGACATGGTCGTGTTGAATCCAGGAT
TTATATTCGGACCACTCTTGCAACCAACTCTGAACTTTTCGGTAGAGCTAATTGTGGATTTCAT
AAATGGTAAGAATCCTTTCAATAGTAGATTCTACCTTTAAAACAATTATTTTCAGACACAGAGA
GACTCAGACAGGAGATATGAACTGCGGAGGAAAGGTGGTCTGCGTTACCGGAGCTTCCGGCTAC
ATAGCGTCTTGGATTGTCAAGCTTTTGCTCCTCCGTGGCTACACCGTCAATGCCACTGTTCGAG
ATCCAACAGAGGACAAGAAGAAAACAGAACATCTTCTTGCACTAGACGGTGCAAAAGAAAGACT
CAAATTGTTCAAAGCAGATCTTTTGGAAGAATCTTCTTTTGATCAAGCTATCGATGGTTGTGAT
GCTGTCTTCCACACTGCTTCTCCAGTTCTATTCACTGTCACAGATCCTCAG

Transcript length: 616
Transcript exons: 3059807-3059947,3060080-3060197,3064107-3064290,3064702-
3064874
ACTGAGCTGATTGATCCAGCCTTAAAGGGTACTATGAACGTCCTTAATACATGCAAAGAAACTC
CCTCTGTCAGAAGGGTCATTCTGACATCATCCACGGCTGCGGTTCTCTTTCGTCAGCCACCTGT
GGAGGCAAGCGATAGAATTGGTATCCACTCTCCAAAATTTTGGCAGAGAATGCAGCGTGGGAAT
TTGCCAAAGACAACGGAATCGACATGGTCGTGTTGAATCCAGGATTTATATTCGGACCACTCTT
GCACATTCGAGTTGGAAGTTCCCTTTAAAACAATTATTTTCAGACACAGAGAGACTCAGACAGG
AGATATGAACTGCGGAGGAAAGGTGGTCTGCGTTACCGGAGCTTCCGGCTACATAGCGTCTTGG
ATTGTCAAGCTTTTGCTCCTCCGTGGCTACACCGTCAATGCCACTGTTCGAGATCCAAGCAGAG
GACAAGAAGAAAACAGAACATCTTCTTGCACTAGACGGTGCAAAAGAAAGACTCAAATTGTTCA
AAGCAGATCTTTTGGAAGAATCTTCTTTTGATCAAGCTATCGATGGTTGTGATGCTGTCTTCCA
CACTGCTTCTCCAGTTCTATTCACTGTCACAGATCCTCAG

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.778714679
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017