Detail information of 3_circ_ag.4


General Information
CircRNA Name 3_circ_ag.4
ID in PlantcircBase ath_circ_021638
Alias At_ciR160
Organism Arabidpsis thaliana
Position chr3: 4686109-4690846  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT3G13990_circ_g.1 AT3G13990_circ_g.2 3_circ_ag.3 AT3G13990_circ_g.4 AT3G13990_circ_g.5 AT3G13990_circ_g.6 AT3G13990_circ_g.7 AT3G14000_circ_g.1 AT3G14000_circ_g.2 AT3G14010_circ_g.1 AT3G14010_circ_g.2 AT3G14010_circ_g.3 AT3G14010_circ_g.4 AT3G14010_circ_g.5 AT3G14010_circ_g.6 AT3G14010_circ_g.7 AT3G14010_circ_g.8 AT3G14020_circ_g.1 AT3G14020_circ_g.2 AT3G14067_circ_g.1 AT3G14075_circ_g.1 AT3G14075_circ_g.2 AT3G14080_circ_g.1 AT3G14080_circ_g.2 AT3G14080_circ_g.3 AT3G14100_circ_g.1 AT3G14100_circ_g.2 AT3G14100_circ_g.3 AT3G14100_circ_g.4 AT3G14100_circ_g.5 AT3G14100_circ_g.6 AT3G14100_circ_g.7 AT3G14100_circ_g.8 AT3G14100_circ_g.9 AT3G14110_circ_g.1 AT3G14120_circ_g.1 AT3G14120_circ_g.2 AT3G14120_circ_g.3 AT3G14130_circ_g.1 AT3G14130_circ_g.2 AT3G14130_circ_g.3 AT3G14130_circ_g.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G14150_circ_g.1 AT3G14172_circ_g.1 AT3G14172_circ_g.2
Support reads 24/9
Tissues leaf/leaf, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCCATAGTAATCTCAAACTCATTCTTTAACATATCAATCACTTTTTTCACTCCATCTTCACC
CTTAGCTGCAAGCCCATAGATTATAGGCCTCCCTATaagaacagcttgtgctccgagcgccagc
gctttgaaaacatctgttcctcgtcttactcctccatcaagcaaaaccggaatcctacctttca
cagcatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGAACAGCTTGTGCTCCGAGCGCCAGCGCTTTGAAAACATCTGTTCCTCGTCTTACTCCTCCA
TCAAGCAAAACCGGAATCCTACCTTTCACAGCATGAACAACCTGCAGTTTCATAAGAAGACCAG
TTTGTTCATCAAGAAGAATACGCTTGTTTTATAGCAAGCATTGATTGGTTTACCTCTTCTAAAA
CAGTTATCGTAGCCGGGGAATAGTCGAGCTGGCGAGCCCCGTGGTTGGATACCACTATTCCATC
TACACCGGCTTCAACAGCCTTAAGAGCTGCCAACAGCATCATACAAAGTTTTCTTTTATATGCC
TTGGAATTTCTATAGAGTATATGCTATATATTAGACTACGAGTCTACGAGACATGGATCTTTAC
CGTCTTCACGTGTGAGTAACCCTTTGACCAGAATTGGCAACTTTGTAATAGATCTTAACCATTC
GATATCCTAAGATTTTGCAGTGCAAAAGATTATAAGGAATGTATTCACATGGGAACTTTGTGTC
TAATATCCAAGGAAACAAATAGAACCATTCACAAGATTTTACCTTCCAGCTTAACGAAGCATCA
AATGCACTAGAGGCAAAGGCTTCAACCCCTGAACCTTCATTCTAAGAGAAGTTATCATGTTAAC
AACTGGTAAGGTTTAACTTTACATGAATCTTAATTCAAGCTTTTTTACTCACAGGTCGGACTTC
GGTTGAAACTAAGCCTTCAAAATTCTTCAGCTGTGGGGATATCATTCTACAGAACAAAAAAATG
GAACACCATTTCAGAAAAAAAAATTTATAAGATAGAGATAGACTAAGCAAAGTAGGAATGCTTA
TTCCTGCATGAAAATATCAGAGTATTACTTGTTCTTTATATCTGCTTCCCTTCTACCAAGTCTG
GGAACATCAACAGTTAGAACTATAGCCTTGAATCCAGCTTTTTCAGCTCTTTTCACAATCTGAG
CTGTTACATCACGTCTCTTGTACACCTATATAAGATATCAAAGCGAGTTAAGAACCGAGGCCTA
AGGCCCGAACCAAAAAAGCATATTTTGGAGGAAATGAGAAAAGCAGCTAAAAATTCAGATTGTG
TATTTACATATATTTGAAGAAACCGAACAGCGTTACAACTGGAAGCAACCTCCTCAATAGTGCA
AGTAGACATGAATGATACTATCTGAAATCACACAACCAAACACCATAATCATCACCTTAAAATC
CAAACAATGTAAAAATGCATTCCAACAAACACCGTAGTACCATGATAGTGTTACACGCAGCTGC
AGCTTTCGCTGTGGCGATTTCTCCTAACATAGATAGGAGACAAATCAAATCAATTTCCAAATCC
AGCAATTGTATACAGTTGACAGAGCTAGTTATGAACATAAAACTAAACAGACCTTTAGGATGAG
CCAACTTATGCATTGCTGTTGGAGCAATCATGATGGGAGCTGAGATTGGGTAACCCAACATACT
TGTAGACATATCTATGTTGCTCACATCAACAAGAACCCTAGGCCTAAACCTGTACATAAAGCAC
ACAACACACAAACATATGACACGGTGAAATCAAGTAGATATAGCATCATATTGATATGGATTAG
TTACATGATTCTACGGAAAGCTTGGACATTTTCATTGAGAGTGTGTTGATCCTCTGCTCCTCCA
TTGTAGAAATCATAGTACATCTTAGGGAGGGCCTGTTTGGCCAGCTCTTGAAACTCATCCACGT
TAACGATTTGATCCATTTATCTACAATTTCATATAAAGGAAAGAAATTTAGAATCAAAGAACAC
ACTGCTTTAATAATCAACCATGCAAGAATCTTGCTCCTCTTGTCCTCTATCAAGATTAAACATC
TTTAAAAGAGACCTTATCATCAAACTAATTATCCACTACCGGACTTAATTCGTCTATGTTACTG
ATTTGTTTGAATTAGTATGTTCAAATCTTAATGTTACAGGAAACGACAAAAAATAGATGTATTG
GCTGCGATCATTAAGGGACTCAGAACTAAAACCATTGTAGAAGTAGAAGTTGATTTTAGAAGTA
CTTACATATCTGAAAGAACCCAGTAAAAGATACAGAAACCAGTTTAAGTCTCTGGTAAACAAAG
AAATTAGATATCTTTTAGCTTTATGAAATCTGGAAATGACAGGGAAAAAAGAACACGAGAACAG
AGTCGGTCCTGTCGGAGACCAAGACAGAAAACGACAAAACACCTGCTAACCCTCTAAGTCGTCT
AGAGTCTTTGCCCACAGTAAACGTTGACTATTCAACTCAATGAGGACGTGGCGTACCGAGTCAT
CATCATTTCAGAGAGCCATTTTCCAACGGGAGCTTTTATTTCTTCTCTTCTGACACCAATGCTC
AGTCTCAGAGACCGAAGCGTTTCTTGAAAAGTTGCAAATTTTTACCTCAGAACATATATGTCTA
TAAAAATGGCAACGACCAATTACTCAATGGTCATGCCTATGTTCCGCGACGAATCACGGGGAAG
CCTCTAATGTGTATCGTCGTCGTCAGAGAATAGAAAGCCCGGTAGTTATATTATATAATGTCAT
CTTTTTTAAGTGTTTTTGTGTGTTTTTAAACCCTTTTTTTGAATCCTTTGATTATTCTTACCTT
TGTAACTTTGTTGCGTGCTAATGTTATGGTGGTGATTAGATCTTCATTGGTAATTTACAAGTTG
CAGTTGATAGGTCTTCTTTGTATGAATCTTCTGATTACAGTTCATTTGTCGCTAGAGAATGTTT
GAACAAGGATAGTGCTATGAAGCCTTACGACATATTGTGGAACTGAGGAGTTTGATAAATTTCT
CGTTGTCTTGCCAGGAGCATGTGTCTTACAGCATTTTTGAGAAGGATGAGCATTTTAGTGTTGA
AGATCATTATACTGCAGGAAACTCTTCAAATGAAAGCAACACGAGACCTTCTGACATCTTCCTC
AAGAAGAAGCTGGTGGGACTAAACCCCTCCATTCTGCAACTAAACAGAGAAAAGAGGAAAGCAA
CTTTGAAGTTTTCTGGAGATAACAAGGATATTTTACAATCTACTTTGTCTAGCTCAAAGAACAT
AAATCTTAGTGGTGGTTTGTTTGTCTCTAGAGAATATGAGAACAAGTATGTGAAGTTTGGCGCT
AGAATGCGTTGTGATCTTGTGAATAGGATGAAAGATGTTACGTTGGCTTGGCATGAGTCTGTGT
CTTCTACAAGTGATAAAAATGTTGAGCTTTCTAGTGTTGAGAATCATAAGATAGCTCCAAAGGC
TGATGGGCCAGGGAACTCTTCAAATGAAAGCTCCTCAAGTCCTTTTGATATCTTCCTCAAGAAG
AAGGTGATGAGACTAAAACCCTCCTTTCTGGAACTGAACAGAGAAAAAAAGAAAGCAGCTAAGG
GTTTCAGTGGAATTGTTATTAGACCTGGAATGGTACTTCTCAAGAACTACTTGTCAATCAATAA
TCAAGTAAGTACTCTCTCTCACTATTTCTGTGTTTATGTGTTTATCTGATCTTATATGCATCAT
TTGAGCTTTCTCTGTTTCTTAAAAATGCTTGTAGGTGATGATTGTGAACAAATGTCGTCAACTT
GGTTTGGGTGAAGGAGGCTTCTATCAACCTGGTTTTCAAGATGGCGGGTTGTTGCATTTGAAAA
TGATGTGCCTTGGCAAAAACTGGGACTGTCAAACGCGTCGATATGGAGAGATTCGACCAATTGA
TGGTTCTGTTCCGCCTCGAATTCCCGTTGAATTCAGTCAGCTTGTTGAGAAAGCAATTAAAGAA
TCAAAGTCCCTAGTTGCTACAAATTCAAATGAGACAAAGGGAGGAGATGAAATACCACTTTTGT
TGCCTGACATATGTGTTGTTAACTTCTACACATCCACCGGGAAACTTGGTCTCCATCAGGTTAG
TGTTTACGACAAAACAAGTTTTGATTTCTTAAAGTATAAAGGTGGTTACCTCAATACAGTATCG
TAAGAATTGCTCTTCATTGTATTATTGTTCTTTTAAGTTTCTGCATCATCAACTTATTGAATCC
TTCATGGCTCAGGACAAAGGGGAGAGCAAAAAGTCCCTCCGGAAAGGATTGCCTATTGTATCAT
TTTCTATTGGAGATTCAGCCGAATTCTTGTATGGTGATCAGAAGGATGTTGACAAGGCAGACAC
GTTAATCTTGGAGTCTGGAGATGTTCTAATATTCGGTGAAAGATCAAGAAATGTCTTCCATGGC
GTCAGATCAATTCGTAAGATACTGCCCCCAAGGCTCTTCTTCAGGAAACAAATCTTCAACCAGG
TCGTCTGAATTTAACTTTTAGGCAGTACTAGAGATAGGATCAAACTCATGATTGATGCTGCAGC
TCTTTCCTTTATATTTATATTTTATGCACTAACCACATCATTGTGTCAGACAAGCATTCAATAT
GTTTATCATATGTACTTTTCAAAAGATGAGTGTTGAATTGAATCCATGCTTCAGTCCTTGTTCT
TCTAACATGGCTGCTGGTTGCCACGGTTCTTCAGCTGTCTGATTAAGTTTCTCAGACCATATCT
GTTGGTTTTTTGGATCAGAGCATAGAGTGAAGTCTCTCATTCTCTGTCCTAACATGGTTTCTGG
TTATGTCATCAATGGTTGGACAACCAGAAAGAGCCATAGTAATCTCAAACTCATTCTTTAACAT
ATCAATCACTTTTTTCACTCCATCTTCACCCTTAGCTGCAAGCCCATAGATTATAGGCCTCCCT
AT
Conservation Information
Conserved circRNAs NA
PMCS 0.673337325
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017