Detail information of AT2G03090_circ_g.1


General Information
CircRNA Name AT2G03090_circ_g.1
ID in PlantcircBase ath_circ_012634
Alias NA
Organism Arabidpsis thaliana
Position chr2: 917903-918438  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT2G03090
Parent gene annotation EXPA15
Parent gene strand -
Alternative splicing AT2G03090_circ_g.2 AT2G03090_circ_g.3
Support reads 5
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03090.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTAGCATGAGCATTGACCCATCCAGCGTCATAGCCATGAACAGAGCACACCATTGCAGCAAAA
CAAAACAGAGCAATTCCCAAAAGACCCATCTTACCCcttctgtaggaaacagggacaacaccag
ctttgtactgagcaatgcgttgaaaaacaggctgagagagatcgaaatgatgaagcggagggtt
acaccaac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 447
Transcript exons: 917903-918215,918305-918438
CTTCTGTAGGAAACAGGGACAACACCAGCTTTGTACTGAGCAATGCGTTGAAAAACAGGCTGAG
AGAGATCGAAATGATGAAGCGGAGGGTTACACCAACCACCAGCGTTATTGGGAAGAGCGTTGTT
AGGAGGACAGAAATTGGTGGCTGTGACAATGATAGCACCAGGTAAACACCACGCGCCGTCGCTC
TGACACTTGATCTCAAAACAAGCCCCGCAGCTAAGACCGTTGTTGAACAGAGCAGTGCTCAACG
CCGCCGTGTTGGTCCCGTAACCTTGACTGTAGAGGTTCCCGTAGCCACAAGCTCCACCCATTGT
TCCTGAAGCATCACTTCCACCATAGAAGGTAGCATGAGCATTGACCCATCCAGCGTCATAGCCA
TGAACAGAGCACACCATTGCAGCAAAACAAAACAGAGCAATTCCCAAAAGACCCATCTTACCC

Genomic sequence CTTCTGTAGGAAACAGGGACAACACCAGCTTTGTACTGAGCAATGCGTTGAAAAACAGGCTGAG
AGAGATCGAAATGATGAAGCGGAGGGTTACACCAACCACCAGCGTTATTGGGAAGAGCGTTGTT
AGGAGGACAGAAATTGGTGGCTGTGACAATGATAGCACCAGGTAAACACCACGCGCCGTCGCTC
TGACACTTGATCTCAAAACAAGCCCCGCAGCTAAGACCGTTGTTGAACAGAGCAGTGCTCAACG
CCGCCGTGTTGGTCCCGTAACCTTGACTGTAGAGGTTCCCGTAGCCACAAGCTCCACCTAGAGA
CAACAACATCAACAAGATTGTAAATATCCTAGATTTTCGTTTTCTCTGAGACATTTTAGAGAAC
AAAGTGAGAAGCACATACCCATTGTTCCTGAAGCATCACTTCCACCATAGAAGGTAGCATGAGC
ATTGACCCATCCAGCGTCATAGCCATGAACAGAGCACACCATTGCAGCAAAACAAAACAGAGCA
ATTCCCAAAAGACCCATCTTACCC
Conservation Information
Conserved circRNAs NA
PMCS 0.453931437
Functional Information
Coding potential Y
Potential coding position 918432-917905(-)
Potential amino acid sequence MGLLGIALFCFAAMVCSVHGYDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALS
TALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQP
VFQRIAQYKAGVVPVSYRRGKMGLLGIALFCFAAMVCSVHGYDAGWVNAHATFYGGSDASGTMG
GACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNA
LPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRGKMGLLGIALFCFAAMVCSVHGYD
AGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDG
AWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRGKM
GLLGIALFCFAAMVCSVHGYDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALST
ALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPV
FQRIAQYKAGVVPVSYR(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017