Detail information of AT2G03090_circ_g.2


General Information
CircRNA Name AT2G03090_circ_g.2
ID in PlantcircBase ath_circ_012635
Alias 2:917903-918629
Organism Arabidpsis thaliana
Position chr2: 917903-918629  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03090
Parent gene annotation EXPA15
Parent gene strand -
Alternative splicing AT2G03090_circ_g.1 AT2G03090_circ_g.3
Support reads 1/1
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered AT2G03090.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAGATGTTATATTACATGAACATTCTCTTTGAGAAAGTGCAGAGCTTTAATGGAGGAGAGTG
AGAGAAAAAGGAATGAGAAGGAGAAAGATAGTTTTGcttctgtaggaaacagggacaacaccag
ctttgtactgagcaatgcgttgaaaaacaggctgagagagatcgaaatgatgaagcggagggtt
acaccaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTGTAGGAAACAGGGACAACACCAGCTTTGTACTGAGCAATGCGTTGAAAAACAGGCTGAG
AGAGATCGAAATGATGAAGCGGAGGGTTACACCAACCACCAGCGTTATTGGGAAGAGCGTTGTT
AGGAGGACAGAAATTGGTGGCTGTGACAATGATAGCACCAGGTAAACACCACGCGCCGTCGCTC
TGACACTTGATCTCAAAACAAGCCCCGCAGCTAAGACCGTTGTTGAACAGAGCAGTGCTCAACG
CCGCCGTGTTGGTCCCGTAACCTTGACTGTAGAGGTTCCCGTAGCCACAAGCTCCACCTAGAGA
CAACAACATCAACAAGATTGTAAATATCCTAGATTTTCGTTTTCTCTGAGACATTTTAGAGAAC
AAAGTGAGAAGCACATACCCATTGTTCCTGAAGCATCACTTCCACCATAGAAGGTAGCATGAGC
ATTGACCCATCCAGCGTCATAGCCATGAACAGAGCACACCATTGCAGCAAAACAAAACAGAGCA
ATTCCCAAAAGACCCATCTTACCCCTGCAATAGAACAAATTTCAAACAAAAATTATACCTTTAT
TGGTTATTAGAAAGATAGAAGAAAAAAAACAGTAAAAGAAAGACTTTGAAAGGAAGATGTTATA
TTACATGAACATTCTCTTTGAGAAAGTGCAGAGCTTTAATGGAGGAGAGTGAGAGAAAAAGGAA
TGAGAAGGAGAAAGATAGTTTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.336792577
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020