Detail information of AT2G03090_circ_g.3


General Information
CircRNA Name AT2G03090_circ_g.3
ID in PlantcircBase ath_circ_012636
Alias 2:918024-918192
Organism Arabidpsis thaliana
Position chr2: 918024-918192  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03090
Parent gene annotation EXPA15
Parent gene strand -
Alternative splicing AT2G03090_circ_g.1 AT2G03090_circ_g.2
Support reads 3
Tissues flower
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G03090.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAACAAGCCCCGCAGCTAAGACCGTTGTTGAACAGAGCAGTGCTCAACGCCGCCGTGTTGGTC
CCGTAACCTTGACTGTAGAGcgttgttaggaggacagaaattggtggctgtgacaatgatagca
ccaggtaaacaccacgcgccgtcgctctgacacttgatctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTTGTTAGGAGGACAGAAATTGGTGGCTGTGACAATGATAGCACCAGGTAAACACCACGCGCC
GTCGCTCTGACACTTGATCTCAAAACAAGCCCCGCAGCTAAGACCGTTGTTGAACAGAGCAGTG
CTCAACGCCGCCGTGTTGGTCCCGTAACCTTGACTGTAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.437998473
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020