Detail information of Os03g0773600_circ_g.1


General Information
CircRNA Name Os03g0773600_circ_g.1
ID in PlantcircBase osa_circ_022050
Alias NA
Organism Oryza sativa
Position chr3: 32064439-32067269  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0773600
Parent gene annotation Kinesin, motor region domain containing protein. (Os03t0773600-0
1);Hypothetical conserved gene. (Os03t0773600-02)
Parent gene strand +
Alternative splicing Os03g0773600_circ_g.2 Os03g0773600_circ_g.3 Os03g0773600_circ_g.4 Os03g0773600_circ_g.5 Os03g0773600_circ_g.6 Os03g0773600_circ_g.7 Os03g0773600_circ_g.8 Os03g0773600_circ_g.9 Os03g0773600_circ_g.10 Os03g0773600_circ_g.11 Os03g0773600_circ_g.12 Os03g0773600_circ_g.13 Os03g0773600_circ_g.14 Os03g0773600_circ_g.15 Os03g0773600_circ_g.16 Os03g0773600_circ_g.17 Os03g0773600_circ_g.18 Os03g0773600_circ_g.19 Os03g0773600_circ_g.20
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0773600-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGGTTATCTATGATTTGCTTGAAAAATCGTCAGGTCACCTGGAGCTTCGTGAAGATCCTGTG
CATGGTATAATGGTTGCTGGTTTAAGAAGCATTAAGgtggctgtgaagtgcaggccactgacag
acagcgagcagcggcgttcgcggcatatcatacaagtcattgatgataaggtgcaggctctagt
ttagtagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGCTGTGAAGTGCAGGCCACTGACAGACAGCGAGCAGCGGCGTTCGCGGCATATCATACAAG
TCATTGATGATAAGGTGCAGGCTCTAGTTTAGTAGTAAAATGCGTAATTTGTTGTGCAGTTGTT
CAGTTGGAATTCTGCCAGATTGTGATTGTAATGTGTTGCCTGTATGTTTTTTGCCCCCCAGAAT
GTCGTTGTGCTGGACCCTGATCTGTCCAAGGACTACCTTGAACTCATCCAAAACAGGACCAAGG
AGAGAAGATACAGCTTCGATCATGTGTATGCGCCCGGGTGCTCCAATGCGGTATGCAGGCTCAG
ATAGATTGTGATGCTCTAAACTGGAACTGCTTTGTCTGTTACCAAATGGGCTCATATGCTGATT
ACAGCAAGTGCTTGGAACTGCACCACAGTTTGGAAATTCCTGAATTGTTCATAACTAGCATGTT
AGGAAATGATGCCCCTAAAGGCCAAACCCCAACCTACTTCTTTGGATCATTAACTGCTAAATTT
AGGAGGTTCTCGTGCTTTGTACAGTTGAAACAATACTGTTGGTACCAACAAAAGGCCAACACGA
AGTATTTGTACTATTGTTCAGTCTGGAGCAATCCAGTATGTACTGTTACTAGTGTTAGGTAGTC
TACCTAACAAATACATACGTCTGGTTAAGGGAAAAGGACTGTAGTTTAGTTGTTGTATTAAACT
CTACAACCTAGATCTTCTTAGGAAAACCTGCACTGTAAGCATGCTTTGCACGCTTATACATTAA
CTTCATTGCTCCAACCTTTAATACTTGCAACTCTGGGTCCCTGTCAAAACCAGTCTTCCTGACA
CAGTTACAGTATTCGACACCACGGCCATCTTAGATATACACGACCTCTTGTGCCTATTGTATTA
AGGTCTGAAAATTATGTAAGGTAGTGAGTTACCGCACATGTCTTGTGTTTATTTGGTGGACCAT
ACAACCATGAGAGCGCTGAGCGCAGGAGCGCCAAATTGCTTGTGTACTAATTTATTAGCCTGTT
TAAAGCAAAATCCATCTGCAAATTTTGTAGTCAGCAAGATCCTGGCCGGAAACAAGAAAACTGA
CTATCAAATGGTAGCAACTTATTCTACCATATAGCCTATCTTATTATTGTAGTCCAACAGGTCT
ACAAAAATAATTATCTTTTTCATAGAAATACATCCCTATTTTTTAAAAAAAAAACAAGAAAAAA
AATTCAATGGCGCTAAAATGCTTTATGTTCTATATCTGACATCTGTCAGTCACATTCATATAGA
CAAGATGTACAAAACATAAATAATTGTGTGATCATTGGACCATGTTGGGCTGATTAATGAAGAC
ATGTAAATGAACATATGCTCTGTAAATAAATTTTAATTATCTTATACATAATTGGGCTAACCAG
TTTGCAATTATATGCTAACTGGTTTGCAGTTATGTACAAATGTTTTCTTGAACTGCAGTTGCCT
AAAACTGTAAGTCTTGATAGATTTTGTTTTTGATCTTGGGAGCTTTTCAGTATCTATATTTCCA
TTACTGAAAAAATGTATGAGAATTACAAGATGAGAATCTGTTGTGTGCGCACACGTATGCACCA
GCTTGCTTGCTTGTTAACTGCTGGGGGCAAATGCCATGTTCTCTTGTACTCCACTATCACATTT
TAAGATCGTGCTTTGATAATGCAATTACATTACTTGTGCAGGATGTATATAAGAATATATCTTC
TACAATTGCTGGTGTAGTTCAAGGCCTTAATGCGACAGTCTTTGCTTATGGTTCTACTGGAAGG
TACATGCTCACTGGATAGTTTTGTTGTTTGCAAGCATACTGCCTGCTGCACATATTGCTATCAT
CACACATACTGCCGTAAATTTCTGAACCCTGAATTATCTCATTTGCTGCTATTGTTAGATATGG
TTTACATTTGAAAAACTTGCTACACTCAGTTGGTATGATATGAAAGTGTTTCTTCAAATCAACC
ACATTATGTTTGCCTGATTTCCTCTTATGTTTTTTTCCTTTGAGATGCCTAACTTAAAACTATT
GTGAATTTGTGATATGTGATATATACTATATCTGCTGAGTTCACCTCATGCCAATTGTAAACAA
AATCATGATTATGTTTAGTCCATTGCCATTCTTGTTTTGTGAAACTTAAATAAATGCTAAAACA
AACTGAGACCATCCTACCTTTTCAGTAAACTTGAACTTTGGTAAGAAAGGCTTCTTTAGTTTTT
TTTTAATCATGACATAATATGAAAAATATGACTTAGCCACTTTACGGAGCTTCCTTGGTGAAGC
TATTATACTATTTGGGCAAGTTCATTTTTCCTTTTTATGGGAATCCACGCTCATCATTGTGTCC
ATTAATAATGAAGTTTTACAAATACTTCAATACTGATCTAGAAGCTGAAATGGCTCTTATTAGT
ATTACGCTTCATATGCATAATGTGAAATATTCTGTTATTTGTGATTGTGCAGTGGGAAAACTTA
TACAATGGTTGGAACCCATAGTGATCCTGGTCTTATGGTTCTGAGCTTTCGCACAATCTTTGAT
CTGGTAAAGAAGGATGACAGTAAAGATACGTTTGAGGTCTCATGTTCATATCTTGAAGTGTACA
ATGAGGTAATGTGCAATATATAGTTTCTTAAAAAAGTTAACTATTAGTCCTTAAATTCTCTATA
CTACATATAAACTTTCGTGAAAAAACTCTGTGCTTTCTGAATTCCAGGTTATCTATGATTTGCT
TGAAAAATCGTCAGGTCACCTGGAGCTTCGTGAAGATCCTGTGCATGGTATAATGGTTGCTGGT
TTAAGAAGCATTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.114955019
Functional Information
Coding potential Y
Potential coding position 32066940-32067266(+)
32066955-32067257(-)
32064508-32067208(-)
Potential amino acid sequence MVGTHSDPGLMVLSFRTIFDLVKKDDSKDTFEVSCSYLEVYNEVIYDLLEKSSGHLELREDPVH
GIMVAGLRSIKVAVKCRPLTDSEQRRSRHIIQVIDDKNVVVLDPDLSKDYLELIQNRTKERRYS
FDHVYAPGCSNADVYKNISSTIAGVVQGLNATVFAYGSTGSGKTYTMVGTHSDPGLMVLSFRTI
FDLVKKDDSKDTFEVSCSYLEVYNEVIYDLLEKSSGHLELREDPVHGIMVAGLRSIKVAVKCRP
LTDSEQRRSRHIIQVIDDKNVVVLDPDLSKDYLELIQNRTKERRYSFDHVYAPGCSNADVYKNI
SSTIAGVVQGLNATVFAYGSTGSGKTYTMVGTHSDPGLMVLSFRTIFDLVKKDDSKDTFEVSCS
YLEVYNEVIYDLLEKSSGHLELREDPVHGIMVAGLRSIKVAVKCRPLTDSEQRRSRHIIQVIDD
KNVVVLDPDLSKDYLELIQNRTKERRYSFDHVYAPGCSNADVYKNISSTIAGVVQGLNATVFAY
GSTGSGKTYTMVGTHSDPGLMVLSFRTIFDLVKKDDSKDTFEVSCSYLEVYNEVIYDLLEKSSG
HLELREDPVHGIMVAGLRSIK(+)
MGSNHCISFPTSSRTISKDCRIKALNYTSNCRRYILIYIRIGAPGRIHMIEAVSSLLGPVLDEF
KVVLGQIRVQHNDILIINDLYDMPRTPLLAVCQWPALHSHLNAS*(-)
MTCMICRERRCSLSVSGLHFTATLMLLKPATIIPCTGSSRSSR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017