Detail information of 3_circ_ag.5


General Information
CircRNA Name 3_circ_ag.5
ID in PlantcircBase ath_circ_021643
Alias NA
Organism Arabidpsis thaliana
Position chr3: 4687204-4691916  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT3G13990_circ_g.1 AT3G13990_circ_g.2 3_circ_ag.3 AT3G13990_circ_g.4 AT3G13990_circ_g.5 AT3G13990_circ_g.6 AT3G13990_circ_g.7 AT3G14000_circ_g.1 AT3G14000_circ_g.2 AT3G14010_circ_g.1 AT3G14010_circ_g.2 AT3G14010_circ_g.3 AT3G14010_circ_g.4 AT3G14010_circ_g.5 AT3G14010_circ_g.6 AT3G14010_circ_g.7 AT3G14010_circ_g.8 AT3G14020_circ_g.1 AT3G14020_circ_g.2 AT3G14067_circ_g.1 AT3G14075_circ_g.1 AT3G14075_circ_g.2 AT3G14080_circ_g.1 AT3G14080_circ_g.2 AT3G14080_circ_g.3 AT3G14100_circ_g.1 AT3G14100_circ_g.2 AT3G14100_circ_g.3 AT3G14100_circ_g.4 AT3G14100_circ_g.5 AT3G14100_circ_g.6 AT3G14100_circ_g.7 AT3G14100_circ_g.8 AT3G14100_circ_g.9 AT3G14110_circ_g.1 AT3G14120_circ_g.1 AT3G14120_circ_g.2 AT3G14120_circ_g.3 3_circ_ag.4 AT3G14130_circ_g.1 AT3G14130_circ_g.2 AT3G14130_circ_g.3 AT3G14130_circ_g.4 3_circ_ag.6 3_circ_ag.7 AT3G14150_circ_g.1 AT3G14172_circ_g.1 AT3G14172_circ_g.2
Support reads 17
Tissues root, inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACCAAGTCTAGGAACATCAACAGTCAGAACTATGGCCTTAAACCCAGCTTTCTCAGCTCTTTT
CACCACCTGAGCAGTTATGTCCCGTCTCTTGTACACatatatttgaagaaaccgaacagcgtta
caactggaagcaacctcctcaatagtgcaagtagacatgaatgatactatctgaaatcacacaa
ccaaacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATATATTTGAAGAAACCGAACAGCGTTACAACTGGAAGCAACCTCCTCAATAGTGCAAGTAGAC
ATGAATGATACTATCTGAAATCACACAACCAAACACCATAATCATCACCTTAAAATCCAAACAA
TGTAAAAATGCATTCCAACAAACACCGTAGTACCATGATAGTGTTACACGCAGCTGCAGCTTTC
GCTGTGGCGATTTCTCCTAACATAGATAGGAGACAAATCAAATCAATTTCCAAATCCAGCAATT
GTATACAGTTGACAGAGCTAGTTATGAACATAAAACTAAACAGACCTTTAGGATGAGCCAACTT
ATGCATTGCTGTTGGAGCAATCATGATGGGAGCTGAGATTGGGTAACCCAACATACTTGTAGAC
ATATCTATGTTGCTCACATCAACAAGAACCCTAGGCCTAAACCTGTACATAAAGCACACAACAC
ACAAACATATGACACGGTGAAATCAAGTAGATATAGCATCATATTGATATGGATTAGTTACATG
ATTCTACGGAAAGCTTGGACATTTTCATTGAGAGTGTGTTGATCCTCTGCTCCTCCATTGTAGA
AATCATAGTACATCTTAGGGAGGGCCTGTTTGGCCAGCTCTTGAAACTCATCCACGTTAACGAT
TTGATCCATTTATCTACAATTTCATATAAAGGAAAGAAATTTAGAATCAAAGAACACACTGCTT
TAATAATCAACCATGCAAGAATCTTGCTCCTCTTGTCCTCTATCAAGATTAAACATCTTTAAAA
GAGACCTTATCATCAAACTAATTATCCACTACCGGACTTAATTCGTCTATGTTACTGATTTGTT
TGAATTAGTATGTTCAAATCTTAATGTTACAGGAAACGACAAAAAATAGATGTATTGGCTGCGA
TCATTAAGGGACTCAGAACTAAAACCATTGTAGAAGTAGAAGTTGATTTTAGAAGTACTTACAT
ATCTGAAAGAACCCAGTAAAAGATACAGAAACCAGTTTAAGTCTCTGGTAAACAAAGAAATTAG
ATATCTTTTAGCTTTATGAAATCTGGAAATGACAGGGAAAAAAGAACACGAGAACAGAGTCGGT
CCTGTCGGAGACCAAGACAGAAAACGACAAAACACCTGCTAACCCTCTAAGTCGTCTAGAGTCT
TTGCCCACAGTAAACGTTGACTATTCAACTCAATGAGGACGTGGCGTACCGAGTCATCATCATT
TCAGAGAGCCATTTTCCAACGGGAGCTTTTATTTCTTCTCTTCTGACACCAATGCTCAGTCTCA
GAGACCGAAGCGTTTCTTGAAAAGTTGCAAATTTTTACCTCAGAACATATATGTCTATAAAAAT
GGCAACGACCAATTACTCAATGGTCATGCCTATGTTCCGCGACGAATCACGGGGAAGCCTCTAA
TGTGTATCGTCGTCGTCAGAGAATAGAAAGCCCGGTAGTTATATTATATAATGTCATCTTTTTT
AAGTGTTTTTGTGTGTTTTTAAACCCTTTTTTTGAATCCTTTGATTATTCTTACCTTTGTAACT
TTGTTGCGTGCTAATGTTATGGTGGTGATTAGATCTTCATTGGTAATTTACAAGTTGCAGTTGA
TAGGTCTTCTTTGTATGAATCTTCTGATTACAGTTCATTTGTCGCTAGAGAATGTTTGAACAAG
GATAGTGCTATGAAGCCTTACGACATATTGTGGAACTGAGGAGTTTGATAAATTTCTCGTTGTC
TTGCCAGGAGCATGTGTCTTACAGCATTTTTGAGAAGGATGAGCATTTTAGTGTTGAAGATCAT
TATACTGCAGGAAACTCTTCAAATGAAAGCAACACGAGACCTTCTGACATCTTCCTCAAGAAGA
AGCTGGTGGGACTAAACCCCTCCATTCTGCAACTAAACAGAGAAAAGAGGAAAGCAACTTTGAA
GTTTTCTGGAGATAACAAGGATATTTTACAATCTACTTTGTCTAGCTCAAAGAACATAAATCTT
AGTGGTGGTTTGTTTGTCTCTAGAGAATATGAGAACAAGTATGTGAAGTTTGGCGCTAGAATGC
GTTGTGATCTTGTGAATAGGATGAAAGATGTTACGTTGGCTTGGCATGAGTCTGTGTCTTCTAC
AAGTGATAAAAATGTTGAGCTTTCTAGTGTTGAGAATCATAAGATAGCTCCAAAGGCTGATGGG
CCAGGGAACTCTTCAAATGAAAGCTCCTCAAGTCCTTTTGATATCTTCCTCAAGAAGAAGGTGA
TGAGACTAAAACCCTCCTTTCTGGAACTGAACAGAGAAAAAAAGAAAGCAGCTAAGGGTTTCAG
TGGAATTGTTATTAGACCTGGAATGGTACTTCTCAAGAACTACTTGTCAATCAATAATCAAGTA
AGTACTCTCTCTCACTATTTCTGTGTTTATGTGTTTATCTGATCTTATATGCATCATTTGAGCT
TTCTCTGTTTCTTAAAAATGCTTGTAGGTGATGATTGTGAACAAATGTCGTCAACTTGGTTTGG
GTGAAGGAGGCTTCTATCAACCTGGTTTTCAAGATGGCGGGTTGTTGCATTTGAAAATGATGTG
CCTTGGCAAAAACTGGGACTGTCAAACGCGTCGATATGGAGAGATTCGACCAATTGATGGTTCT
GTTCCGCCTCGAATTCCCGTTGAATTCAGTCAGCTTGTTGAGAAAGCAATTAAAGAATCAAAGT
CCCTAGTTGCTACAAATTCAAATGAGACAAAGGGAGGAGATGAAATACCACTTTTGTTGCCTGA
CATATGTGTTGTTAACTTCTACACATCCACCGGGAAACTTGGTCTCCATCAGGTTAGTGTTTAC
GACAAAACAAGTTTTGATTTCTTAAAGTATAAAGGTGGTTACCTCAATACAGTATCGTAAGAAT
TGCTCTTCATTGTATTATTGTTCTTTTAAGTTTCTGCATCATCAACTTATTGAATCCTTCATGG
CTCAGGACAAAGGGGAGAGCAAAAAGTCCCTCCGGAAAGGATTGCCTATTGTATCATTTTCTAT
TGGAGATTCAGCCGAATTCTTGTATGGTGATCAGAAGGATGTTGACAAGGCAGACACGTTAATC
TTGGAGTCTGGAGATGTTCTAATATTCGGTGAAAGATCAAGAAATGTCTTCCATGGCGTCAGAT
CAATTCGTAAGATACTGCCCCCAAGGCTCTTCTTCAGGAAACAAATCTTCAACCAGGTCGTCTG
AATTTAACTTTTAGGCAGTACTAGAGATAGGATCAAACTCATGATTGATGCTGCAGCTCTTTCC
TTTATATTTATATTTTATGCACTAACCACATCATTGTGTCAGACAAGCATTCAATATGTTTATC
ATATGTACTTTTCAAAAGATGAGTGTTGAATTGAATCCATGCTTCAGTCCTTGTTCTTCTAACA
TGGCTGCTGGTTGCCACGGTTCTTCAGCTGTCTGATTAAGTTTCTCAGACCATATCTGTTGGTT
TTTTGGATCAGAGCATAGAGTGAAGTCTCTCATTCTCTGTCCTAACATGGTTTCTGGTTATGTC
ATCAATGGTTGGACAACCAGAAAGAGCCATAGTAATCTCAAACTCATTCTTTAACATATCAATC
ACTTTTTTCACTCCATCTTCACCCTTAGCTGCAAGCCCATAGATTATAGGCCTCCCTATCTGCA
TCAGCCAACCAGAAAGTGTCATAATACCAACAGAGAGCAACCTGAAAATTGTATGCTAGATAGC
ATTGAAAGCTTACAAGAACAGCTTGTGCTCCAAGTGCCAGGGCTTTGAAAACATCTGTCCCTCG
TCTTACTCCTCCATCAAGCAAAACCGGAATCCTACCTCTAACAACTTGAACAACCTGTAGTAGT
GTAGTACCATAAGAAGACTTGTTTGTTCATTGAGAAGAATAAGCTTGTTTAAAAGCAAGCTTTG
ATTGGTTTACCTCTTCTAAAACAGTTATTGTAGCAGGGGAATAGTCGAGCTGGCGACCCCCATG
GTTAGATACAATTATTCCATCTACACCAGCTTCAACAGCCTTAAGAGCTGCATTGAGAAAAGTC
TCTTATATGCCTTGAAGTTTCAAGATTGTTTGATACGGGCAATATATATCATGAGTATGAGACA
AGAATCACACCGTCTTCTCGGGTGAGTATCCCTTTGACCAGAATAGGTAACTCTGTAATAGATC
TTAACCATTCAATGTCCTAAAATTTTGCAGTGAAAATGTTATAAGAATTTCCCTCACATTGTCA
TGGCTCATGGGAACTTTTTGTTAAGTAATCAAGGAATAAAGATTGATTTCAGTATTTCACCTTC
CAGCTAAATGAAGCATCAAATGCACGAGAGGCGAAGGCTTGTACCCCTGAACCTTTACTCTGAA
AAAAGTTATCACGTCAACAACTGGTAAGGTTTCACTTTTACATGAACCTTAATTCAAGCTCTAC
TTACAGGTCGGACTTCGGTTGAAAATAAACCTTCGAAATTCTTCAGCTGCGGGGATATCATTCT
ATAGAATAAAAATGAAACTTCATTTCATAAACTACATTTTATAAGATAGGGAAGCTTATTCCTG
CAAGATATAAGTTCCCAAAAACTCAGAGTAATGGAGAGTGTTACTTGTTCTTTATATCAGCTTC
CCTTCTACCAAGTCTAGGAACATCAACAGTCAGAACTATGGCCTTAAACCCAGCTTTCTCAGCT
CTTTTCACCACCTGAGCAGTTATGTCCCGTCTCTTGTACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.625109392
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017