Detail information of Os03g0262200_circ_g.4


General Information
CircRNA Name Os03g0262200_circ_g.4
ID in PlantcircBase osa_circ_018976
Alias Os_ciR9198
Organism Oryza sativa
Position chr3: 8574636-8574750  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method find_circ
Parent gene Os03g0262150
Parent gene annotation Hypothetical gene. (Os03t0262150-01)
Parent gene strand +
Alternative splicing Os03g0262200_circ_g.2 Os03g0262200_circ_g.3 Os03g0262200_circ_g.5
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os03t0262200-00:1
Os03t0262150-01:1
Os03t0262200-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTGAGAGATTTGACAGAAATCAATCATATAAATGAGATAAATTTTAAAATAATAActcaggt
gccatccaataaacagttcctttgcacgatttaagcacgttgaatttggta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAGGTGCCATCCAATAAACAGTTCCTTTGCACGATTTAAGCACGTTGAATTTGGTAATCTGA
GAGATTTGACAGAAATCAATCATATAAATGAGATAAATTTTAAAATAATAA
Conservation Information
Conserved circRNAs NA
PMCS 0.415774348
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015