Detail information of Os03g0262200_circ_g.5


General Information
CircRNA Name Os03g0262200_circ_g.5
ID in PlantcircBase osa_circ_041319
Alias NA
Organism Oryza sativa
Position chr3: 8574806-8575239  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os03g0262200
Parent gene annotation Similar to predicted protein. (Os03t0262200-00)
Parent gene strand -
Alternative splicing Os03g0262200_circ_g.2 Os03g0262200_circ_g.3 Os03g0262200_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0262150-01:2
Os03t0262150-01:2
Os03t0262200-00:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCTGAAACATGAGTATCTCGCAGTCTGTACTTCTGATACAAAGATGCAAGAGATCCTTGGGT
GACTAATTCAAGGAAGATGTACAGTTTTGAGTCCTCctccttagcaagaccaaagtcagcaagt
ttcacggatccattggcatgcaccaatatattggcacatttgatatccctgcaagacgagattt
gaactgtt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 234
Transcript exons: 8574806-8574881,8575082-8575239
CTCCTTAGCAAGACCAAAGTCAGCAAGTTTCACGGATCCATTGGCATGCACCAATATATTGGCA
CATTTGATATCCCTATGAACAATGTTTCGCTCATGCAGGTAAGTCAACCCATTAAGAATCTGTC
TTGTATATGCTGAAACATGAGTATCTCGCAGTCTGTACTTCTGATACAAAGATGCAAGAGATCC
TTGGGTGACTAATTCAAGGAAGATGTACAGTTTTGAGTCCTC

Genomic sequence CTCCTTAGCAAGACCAAAGTCAGCAAGTTTCACGGATCCATTGGCATGCACCAATATATTGGCA
CATTTGATATCCCTGCAAGACGAGATTTGAACTGTTATTCACTTATTCAGAATAAATGTACAGT
ACCAGTTCCTTAAGAATCTTCAAGCTAACGATAAAAATCAGTGAGCAGGCATTAATTAGAATAA
CTGTCAGCTGAAGTGAAAAAAAAAAACAATAAGCCTCCTTAGAAGGCTAAACAGCAGATATGCT
GATTCAACTAATGTTATTACCTATGAACAATGTTTCGCTCATGCAGGTAAGTCAACCCATTAAG
AATCTGTCTTGTATATGCTGAAACATGAGTATCTCGCAGTCTGTACTTCTGATACAAAGATGCA
AGAGATCCTTGGGTGACTAATTCAAGGAAGATGTACAGTTTTGAGTCCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.187029704
Functional Information
Coding potential Y
Potential coding position 8575221-8575084(+)
Potential amino acid sequence MYSFESSSLARPKSASFTDPLACTNILAHLISL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study