Detail information of Os06g0258900_circ_g.5


General Information
CircRNA Name Os06g0258900_circ_g.5
ID in PlantcircBase osa_circ_030449
Alias NA
Organism Oryza sativa
Position chr6: 8303405-8304856  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0258900
Parent gene annotation NAD(P)-binding domain containing protein. (Os06t0258900-01);Simi
lar to predicted protein. (Os06t0258900-02)
Parent gene strand +
Alternative splicing Os06g0258900_circ_g.4 Os06g0258900_circ_g.6 Os06g0258900_circ_g.7 Os06g0258900_circ_g.8 Os06g0258900_circ_g.9 Os06g0258900_circ_g.10 Os06g0258900_circ_g.11 Os06g0258900_circ_g.12 Os06g0258900_circ_g.13 Os06g0258900_circ_g.14 Os06g0258900_circ_g.15 Os06g0258900_circ_g.16 Os06g0258900_circ_g.17 Os06g0258900_circ_g.18 Os06g0258900_circ_g.19
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0258900-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAACAGCAAAAACTATCGGCTTTATTGGTCTTGGAGCTATGGGCTTTGGAATGGCATCTCAT
TTGCTAAAATCAGGTTTCTCCGTTATTGCTTATGATcaaaattaagctggttaatgatttgctg
gagagcattcattttatagcatctattgaagcaatgtttcttggtgttcgggctgggattcatc
catcaatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 538
Transcript exons: 8303405-8303542,8303638-8303719,8304314-8304392,8304540-
8304583,8304662-8304856
CAAAATTAAGCTGGTTAATGATTTGCTGGAGAGCATTCATTTTATAGCATCTATTGAAGCAATG
TTTCTTGGTGTTCGGGCTGGGATTCATCCATCAATTATCTATGACATAATATCGAATGCTGCCG
GAAGCTCAAGAATATTCGTGGAGATCGTACCAAAGCTTTTGAGAGAGGATTCTTTGCTTATTGA
TTATCTAGAGTCATCCAAGACAAACGCAGGCTATGTGATGGATATGGCTAAAGCAGTAATATTC
CCTTTGCCACTTGTAGCTGTTTCTTATCAACAATTAATACATGGTTGTTCATCAGCAAATGGAG
ATGCATTAGTCTCACCGTTGAAGGTTTGGGAACAGTCATTTGGAGTAAACATCATAGATGCTGC
CAGTCAACAAATCTACGATGCAAGCAAATTAGCTGACCAGCTTGTTATGGCATGTAAAACAGCA
AAAACTATCGGCTTTATTGGTCTTGGAGCTATGGGCTTTGGAATGGCATCTCATTTGCTAAAAT
CAGGTTTCTCCGTTATTGCTTATGAT

Genomic sequence CAAAATTAAGCTGGTTAATGATTTGCTGGAGAGCATTCATTTTATAGCATCTATTGAAGCAATG
TTTCTTGGTGTTCGGGCTGGGATTCATCCATCAATTATCTATGACATAATATCGAATGCTGCCG
GAAGCTCAAGGTTATAAGAGTAATTCAGTTCTTTTTTATTCTATCTAAATCTTCCATACTTTTA
TGCATTTATTTAAATCAAGATCTTAACTTATTATGCTACAGAATATTCGTGGAGATCGTACCAA
AGCTTTTGAGAGAGGATTCTTTGCTTATTGATTATCTAGAGTCATCCAAGACAAACGCAGTAAG
CTCCTTTATGTCAGGACTACTTGCATCATCATAAAATATAGTATCCTTCATTCCTTAAATACTC
ACACTGAAACAGCTCCTGAGACTTTTTTTCCCTGTCAGACAATCAATTCACCTTGGTGAAATAT
TTTTCATTCAACATACACATGTTCATTCTCTCATAATTTCACTACAACCCTTCTTTCTTTTTCT
ACAACCAATGGGAGGAGAGGTACTGGAGAGGAGATTAGATATATGAGATGGTGCCAGGGGCAAA
TATATAAATGTGATAAAGAACAAGGGAGGGGGGTATGGGGGCAAGGGATGAATTCCATCTGACT
GGTCCTTAAAATAGCTTGAGAAGTTGTAATGTTCTAACTATAATTGTTGCCTTCCCCATGGCAA
ACAGTTTACTCTAGTCTTTTACTCTTGTGGATTTAATTTTTAGGTATTTATATTTTTGTATATG
TTGCCAGGATACTCTCTTTCAGATATTATTAATTACTTAAGTGTTGCTCTGATGTTGTGAAATG
TAAAAGGACTATGGCTACTGCAAGGCTGAACGCTTCTGCTTCTGAATTATTATTTTTTTCACTC
TTAAACATTATAGGGCTATGTGATGGATATGGCTAAAGCAGTAATATTCCCTTTGCCACTTGTA
GCTGTTTCTTATCAACAATTAATACATGGTATGCTGTTAAACTCCTTTGCATCAGCCATTTGAT
GGCAAAATGCTAGTTCAAAGTCATTTATGCTTTTAATAAAAAGACTTGAATCCCTACATTCTTT
GCTTATGTTTTTTTCATTCATATGCATTTCTCTGTTCTTAATTTCAGGTTGTTCATCAGCAAAT
GGAGATGCATTAGTCTCACCGTTGAAGGTGTGAACTGTCGGGTTATTTTAATTCTGATTATAGA
TGCTTCAGTTTCGCAAATATATTATAAAACTTCATTTGCAGGTTTGGGAACAGTCATTTGGAGT
AAACATCATAGATGCTGCCAGTCAACAAATCTACGATGCAAGCAAATTAGCTGACCAGCTTGTT
ATGGCATGTAAAACAGCAAAAACTATCGGCTTTATTGGTCTTGGAGCTATGGGCTTTGGAATGG
CATCTCATTTGCTAAAATCAGGTTTCTCCGTTATTGCTTATGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.12685027
Functional Information
Coding potential Y
Potential coding position 8303467-8303410(+)
8304853-8303410(+)
8303497-8304845(-)
8303442-8304832(-)
Potential amino acid sequence MFLGVRAGIHPSIIYDIISNAAGSSRIFVEIVPKLLREDSLLIDYLESSKTNAGYVMDMAKAVI
FPLPLVAVSYQQLIHGCSSANGDALVSPLKVWEQSFGVNIIDAASQQIYDASKLADQLVMACKT
AKTIGFIGLGAMGFGMASHLLKSGFSVIAYDQN*(+)
MIKIKLVNDLLESIHFIASIEAMFLGVRAGIHPSIIYDIISNAAGSSRIFVEIVPKLLREDSLL
IDYLESSKTNAGYVMDMAKAVIFPLPLVAVSYQQLIHGCSSANGDALVSPLKVWEQSFGVNIID
AASQQIYDASKLADQLVMACKTAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDQN*(+)
MNPSPNTKKHCFNRCYKMNALQQIINQLNFDHKQ*(-)
MLSSKSLTSLILIISNNGET*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017