Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0258900_circ_g.5 |
ID in PlantcircBase | osa_circ_030449 |
Alias | NA |
Organism | Oryza sativa |
Position | chr6: 8303405-8304856 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os06g0258900 |
Parent gene annotation |
NAD(P)-binding domain containing protein. (Os06t0258900-01);Simi lar to predicted protein. (Os06t0258900-02) |
Parent gene strand | + |
Alternative splicing | Os06g0258900_circ_g.4 Os06g0258900_circ_g.6 Os06g0258900_circ_g.7 Os06g0258900_circ_g.8 Os06g0258900_circ_g.9 Os06g0258900_circ_g.10 Os06g0258900_circ_g.11 Os06g0258900_circ_g.12 Os06g0258900_circ_g.13 Os06g0258900_circ_g.14 Os06g0258900_circ_g.15 Os06g0258900_circ_g.16 Os06g0258900_circ_g.17 Os06g0258900_circ_g.18 Os06g0258900_circ_g.19 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os06t0258900-01:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.12685027 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8303467-8303410(+) 8304853-8303410(+) 8303497-8304845(-) 8303442-8304832(-) |
Potential amino acid sequence |
MFLGVRAGIHPSIIYDIISNAAGSSRIFVEIVPKLLREDSLLIDYLESSKTNAGYVMDMAKAVI FPLPLVAVSYQQLIHGCSSANGDALVSPLKVWEQSFGVNIIDAASQQIYDASKLADQLVMACKT AKTIGFIGLGAMGFGMASHLLKSGFSVIAYDQN*(+) MIKIKLVNDLLESIHFIASIEAMFLGVRAGIHPSIIYDIISNAAGSSRIFVEIVPKLLREDSLL IDYLESSKTNAGYVMDMAKAVIFPLPLVAVSYQQLIHGCSSANGDALVSPLKVWEQSFGVNIID AASQQIYDASKLADQLVMACKTAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDQN*(+) MNPSPNTKKHCFNRCYKMNALQQIINQLNFDHKQ*(-) MLSSKSLTSLILIISNNGET*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |