Detail information of Os06g0258900_circ_g.9


General Information
CircRNA Name Os06g0258900_circ_g.9
ID in PlantcircBase osa_circ_030453
Alias NA
Organism Oryza sativa
Position chr6: 8307855-8308825  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0258900
Parent gene annotation NAD(P)-binding domain containing protein. (Os06t0258900-01);Simi
lar to predicted protein. (Os06t0258900-02)
Parent gene strand +
Alternative splicing Os06g0258900_circ_g.4 Os06g0258900_circ_g.5 Os06g0258900_circ_g.6 Os06g0258900_circ_g.7 Os06g0258900_circ_g.8 Os06g0258900_circ_g.10 Os06g0258900_circ_g.11 Os06g0258900_circ_g.12 Os06g0258900_circ_g.13 Os06g0258900_circ_g.14 Os06g0258900_circ_g.15 Os06g0258900_circ_g.16 Os06g0258900_circ_g.17 Os06g0258900_circ_g.18 Os06g0258900_circ_g.19
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0258900-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGTATCTTGTCTATTCCAGGGTATAGTATCTCATGAAAGCTCCAACGCAAGGATCCCACTGC
ATGTCTCTAGTATTGCTCATCAACTTTTTCTTTCAGttctgtaaagatggtaaaccaacttctt
gctggggttcatatagcctcagcagctgaagcaatggcatttggtgctcgattaaatttgagga
caaggaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCTGTAAAGATGGTAAACCAACTTCTTGCTGGGGTTCATATAGCCTCAGCAGCTGAAGCAATG
GCATTTGGTGCTCGATTAAATTTGAGGACAAGGAGACTTTTTGAAATTATTCAACATGCAAGAG
GTTATTCATGGTACGTTCCATTAGTTATGTCCCTTCACTTTGACCACACTCACTTCTCAATTCT
TCAGATGTGCTATTGTGGACAGAAGATGGCACAAGGAGAGTCCTAAGATTACAAGTTTAGAGGT
GTTTATGTTGAAAGTTATATTAGGCCTCTAGAAAGAGGACTGAGGAAGATAAGATGAGTAAAAT
TAAGCTTACTAAGTTAGCAAAAAGGAGACCAGGTTGGAGCACTAGAGGGATCAAACTGCCCAAA
GCCCACATGCCACGACCCATGTATATGTTTGTTGAGTTAAAAGCTGACTAAACTTGAAAATGTA
GTTTTTCTGAGCTTTTCTCCAGTCCTTGGGTGGTAGATTTTTAGTGTTAATTGGGAGGTATTTG
CCTCTACTAAGAGGGTTAGCACTATGAGATACATATACCTCCCAAGGACTGGGAAAAAAAACTC
AATTAATTATAGCTTCTGCTAATTATCAGCTCCCTTTAGACTCGGTATTTCAAGTATCTCATGG
AACTCCTTCATTAACTGCTATGCTTTGCAATTAGTTAAGATGGCTGGTGATAAGAAAACTGACA
CAATCAATTTTCATATTGCAGGATGTTTGGAAATCGTGTGCCACACATGCTTGATAATGATTAT
ACTCCTTATTCTGCAGTGGACATATTTGTCAAGGATCTTGTATAGATAACCAAACTATTCACCA
ACTTTTAGGTGTTATAAACCATTAGGAACAATTATAATGCATGTATCTTGTCTATTCCAGGGTA
TAGTATCTCATGAAAGCTCCAACGCAAGGATCCCACTGCATGTCTCTAGTATTGCTCATCAACT
TTTTCTTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.148023138
Functional Information
Coding potential Y
Potential coding position 8307866-8307859(+)
8308761-8307908(+)
8307924-8308824(-)
Potential amino acid sequence MVNQLLAGVHIASAAEAMAFGARLNLRTRRLFEIIQHARGYSWMFGNRVPHMLDNDYTPYSAVD
IFVKDLGIVSHESSNARIPLHVSSIAHQLFLSVL*(+)
MKAPTQGSHCMSLVLLINFFFQFCKDGKPTSCWGSYSLSS*(+)
MPLLQLLRLYEPQQEVGLPSLQN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017