Plant Circular RNA Database

Detail information of Os11g0545000_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os11g0545000_circ_g.7
					
						ID in PlantcircBase
						osa_circ_009545
					
						Alias
						Os11circ06816/Os_ciR882
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 20047712-20047966  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl, circseq_cup, find_circ
					
						Parent gene
						
							Os11g0545000						
					
						Parent gene annotation
						
							NOP5, N-terminal domain containing protein. (Os11t0545000-01);Co
nserved hypothetical protein. (Os11t0545000-02);NOP5, N-terminal
 domain containing protein. (Os11t0545000-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os11g0544900_circ_ag.1 Os11g0545000_circ_g.1 Os11g0545000_circ_g.2 Os11g0545000_circ_g.3 Os11g0545000_circ_g.4 Os11g0545000_circ_g.5 Os11g0545000_circ_g.6 						
					
						Support reads
						5/31/6/17
					
						Tissues
						leaf/root/root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0545000-03:2
Os11t0545000-02:1
Os11t0545000-01:2

General Information
CircRNA Name	Os11g0545000_circ_g.7
ID in PlantcircBase	osa_circ_009545
Alias	Os11circ06816/Os_ciR882
Organism	Oryza sativa
Position	chr11: 20047712-20047966 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl, circseq_cup, find_circ
Parent gene	Os11g0545000
Parent gene annotation	NOP5, N-terminal domain containing protein. (Os11t0545000-01);Co nserved hypothetical protein. (Os11t0545000-02);NOP5, N-terminal domain containing protein. (Os11t0545000-03)
Parent gene strand	-
Alternative splicing	Os11g0544900_circ_ag.1 Os11g0545000_circ_g.1 Os11g0545000_circ_g.2 Os11g0545000_circ_g.3 Os11g0545000_circ_g.4 Os11g0545000_circ_g.5 Os11g0545000_circ_g.6
Support reads	5/31/6/17
Tissues	leaf/root/root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0545000-03:2 Os11t0545000-02:1 Os11t0545000-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGTGGATGTAGACCCCACAAAGAGAGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCA
AGTACAAGCCATGATTCTTCACAAAGTCCACAGCACgtcatgtgaagacctgtaagtaccgaac
atcgcccaaatattctggataatataaaggaacacaacgacaggagtaagctagcacatatatt
atattatt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 139
Transcript exons: 20047712-20047755,20047872-20047966
GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATATTCTGATGTAGACCCCACAAAGAG
AGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACAAGCCATGATTCTTCACAAA
GTCCACAGCAC
Transcript length: 143
Transcript exons: 20047712-20047745,20047858-20047966
GTCATGTGAAGACCTGTAAGTACCGAACATCGCCGCATCTGGTAAGTGGATGTAGACCCCACAA
AGAGAGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACAAGCCATGATTCTTCA
CAAAGTCCACAGCAC
Transcript length: 147
Transcript exons: 20047712-20047750,20047859-20047966
GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATCATCTGGTAAGTGGATGTAGACCCC
ACAAAGAGAGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACAAGCCATGATTC
TTCACAAAGTCCACAGCAC
Transcript length: 150
Transcript exons: 20047712-20047755,20047861-20047966
GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATATTCTTCTGGTAAGTGGATGTAGAC
CCCACAAAGAGAGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACAAGCCATGA
TTCTTCACAAAGTCCACAGCAC
Transcript length: 155
Transcript exons: 20047712-20047754,20047855-20047966
GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATATTCATCGCATCTGGTAAGTGGATG
TAGACCCCACAAAGAGAGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACAAGC
CATGATTCTTCACAAAGTCCACAGCAC
Transcript length: 158
Transcript exons: 20047712-20047753,20047851-20047966
GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATATTTTGTATCGCATCTGGTAAGTGG
ATGTAGACCCCACAAAGAGAGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACA
AGCCATGATTCTTCACAAAGTCCACAGCAC
Transcript length: 240
Transcript exons: 20047712-20047845,20047861-20047966
GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATATTCTGGATAATATAAAGGAACACA
ACGACAGGAGTAAGCTAGCACATATATTATATTATTTAACCAAAAAGGAAAGAAGGAAGATAGA
AGTACTTCTGGTAAGTGGATGTAGACCCCACAAAGAGAGAAAATTGAGAAGCCAGAGGGTGTCT
CAAGCAGCAGCAAGTACAAGCCATGATTCTTCACAAAGTCCACAGCAC
						
					

						Genomic sequence
						
							GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATATTCTGGATAATATAAAGGAACACA
ACGACAGGAGTAAGCTAGCACATATATTATATTATTTAACCAAAAAGGAAAGAAGGAAGATAGA
AGTACTCCTACTTGTATCGCATCTGGTAAGTGGATGTAGACCCCACAAAGAGAGAAAATTGAGA
AGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACAAGCCATGATTCTTCACAAAGTCCACAGCAC
						
					

			
		

Sequences
Splice junction sequence	AAGTGGATGTAGACCCCACAAAGAGAGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCA AGTACAAGCCATGATTCTTCACAAAGTCCACAGCACgtcatgtgaagacctgtaagtaccgaac atcgcccaaatattctggataatataaaggaacacaacgacaggagtaagctagcacatatatt atattatt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 139 Transcript exons: 20047712-20047755,20047872-20047966 GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATATTCTGATGTAGACCCCACAAAGAG AGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACAAGCCATGATTCTTCACAAA GTCCACAGCAC Transcript length: 143 Transcript exons: 20047712-20047745,20047858-20047966 GTCATGTGAAGACCTGTAAGTACCGAACATCGCCGCATCTGGTAAGTGGATGTAGACCCCACAA AGAGAGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACAAGCCATGATTCTTCA CAAAGTCCACAGCAC Transcript length: 147 Transcript exons: 20047712-20047750,20047859-20047966 GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATCATCTGGTAAGTGGATGTAGACCCC ACAAAGAGAGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACAAGCCATGATTC TTCACAAAGTCCACAGCAC Transcript length: 150 Transcript exons: 20047712-20047755,20047861-20047966 GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATATTCTTCTGGTAAGTGGATGTAGAC CCCACAAAGAGAGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACAAGCCATGA TTCTTCACAAAGTCCACAGCAC Transcript length: 155 Transcript exons: 20047712-20047754,20047855-20047966 GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATATTCATCGCATCTGGTAAGTGGATG TAGACCCCACAAAGAGAGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACAAGC CATGATTCTTCACAAAGTCCACAGCAC Transcript length: 158 Transcript exons: 20047712-20047753,20047851-20047966 GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATATTTTGTATCGCATCTGGTAAGTGG ATGTAGACCCCACAAAGAGAGAAAATTGAGAAGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACA AGCCATGATTCTTCACAAAGTCCACAGCAC Transcript length: 240 Transcript exons: 20047712-20047845,20047861-20047966 GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATATTCTGGATAATATAAAGGAACACA ACGACAGGAGTAAGCTAGCACATATATTATATTATTTAACCAAAAAGGAAAGAAGGAAGATAGA AGTACTTCTGGTAAGTGGATGTAGACCCCACAAAGAGAGAAAATTGAGAAGCCAGAGGGTGTCT CAAGCAGCAGCAAGTACAAGCCATGATTCTTCACAAAGTCCACAGCAC
Genomic sequence	GTCATGTGAAGACCTGTAAGTACCGAACATCGCCCAAATATTCTGGATAATATAAAGGAACACA ACGACAGGAGTAAGCTAGCACATATATTATATTATTTAACCAAAAAGGAAAGAAGGAAGATAGA AGTACTCCTACTTGTATCGCATCTGGTAAGTGGATGTAGACCCCACAAAGAGAGAAAATTGAGA AGCCAGAGGGTGTCTCAAGCAGCAGCAAGTACAAGCCATGATTCTTCACAAAGTCCACAGCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_009095 						
					
						PMCS
						0.417398039

Conservation Information
Conserved circRNAs	osi_circ_009095
PMCS	0.417398039

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							20047944-20047920(-)
						
						Potential amino acid sequence
						
							MACTCCCLRHPLASQFSLFVGSTSTYQMRYKIFGRCSVLTGLHMTCCGLCEESWLVLAAA*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	20047944-20047920(-)
Potential amino acid sequence	MACTCCCLRHPLASQFSLFVGSTSTYQMRYKIFGRCSVLTGLHMTCCGLCEESWLVLAAA*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Ye et al., 2016;Chu et al., 2017

circRNA

Detail information of Os11g0545000_circ_g.7

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