Detail information of BGIOSGA033842_circ_g.1


General Information
CircRNA Name BGIOSGA033842_circ_g.1
ID in PlantcircBase osi_circ_009095
Alias Chr11:22540444_22540699(ZS97RS2), Chr11:22309018_22309273(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 16859005-16859260  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2
Parent gene BGIOSGA033842
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA033842-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGTGGATGTAGACCCCACAAAGAGAGAAAATTGAGAAGCCAGAGGGCGTCTCAAGCAGCAGCA
AGTACAAGCCATGATTGTTCACAAAGTCCACAGCACcgtcatgtgcagacctgtaagtaccgaa
catcgcccaaatattctggataatataaaggaacacaacgataggagtaagctagcacatatat
tatattat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTCATGTGCAGACCTGTAAGTACCGAACATCGCCCAAATATTCTGGATAATATAAAGGAACAC
AACGATAGGAGTAAGCTAGCACATATATTATATTATTTAACCAAAAAGGAAGGAAGGAAGATAG
AAGTACTCCTACTTGTATCGCATCTGGTAAGTGGATGTAGACCCCACAAAGAGAGAAAATTGAG
AAGCCAGAGGGCGTCTCAAGCAGCAGCAAGTACAAGCCATGATTGTTCACAAAGTCCACAGCAC
Conservation Information
Conserved circRNAs osa_circ_009545
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021