Detail information of Os04g0566100_circ_g.2


General Information
CircRNA Name Os04g0566100_circ_g.2
ID in PlantcircBase osa_circ_024900
Alias NA
Organism Oryza sativa
Position chr4: 28384151-28384475  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0566100
Parent gene annotation Similar to OSIGBa0158F05.11 protein. (Os04t0566100-00)
Parent gene strand +
Alternative splicing Os04g0566100_circ_igg.1 Os04g0566100_circ_g.3 Os04g0566100_circ_igg.4 Os04g0566100_circ_g.5 Os04g0566100_circ_g.6
Support reads 2
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0566100-00:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCACAGAGTTCTCATATTCAGCCAATGGACGACAATGCTTGATATCCTTGAATGGACACTGGA
AGTAATAGGAGTTACTTATAGACGTCTTGATGGGGGctattagtttcctatggtgattctggta
caaagggtgcccttacagatgagcatgttcttggatcagcaaagtgtcaggtgtggttttcccc
cattcctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATTAGTTTCCTATGGTGATTCTGGTACAAAGGGTGCCCTTACAGATGAGCATGTTCTTGGAT
CAGCAAAGTGTCAGGTGTGGTTTTCCCCCATTCCTTAAGGATTGTATATGTACAGTAATATCTT
CAGCAGAAATTGTCTTTAGGATTTAACAATTGAATTCCTTCATTTCTATGTTTTGTTCAGGCCT
TAGCTGAGCTTTTACCTTCCTTAGCAAATGATGGCCACAGAGTTCTCATATTCAGCCAATGGAC
GACAATGCTTGATATCCTTGAATGGACACTGGAAGTAATAGGAGTTACTTATAGACGTCTTGAT
GGGGG
Conservation Information
Conserved circRNAs NA
PMCS 0.287757615
Functional Information
Coding potential Y
Potential coding position 28384412-28384154(+)
Potential amino acid sequence MLDILEWTLEVIGVTYRRLDGGY*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017