Detail information of Os04g0566100_circ_g.3


General Information
CircRNA Name Os04g0566100_circ_g.3
ID in PlantcircBase osa_circ_024901
Alias NA
Organism Oryza sativa
Position chr4: 28384151-28384771  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0566100
Parent gene annotation Similar to OSIGBa0158F05.11 protein. (Os04t0566100-00)
Parent gene strand +
Alternative splicing Os04g0566100_circ_igg.1 Os04g0566100_circ_g.2 Os04g0566100_circ_igg.4 Os04g0566100_circ_g.5 Os04g0566100_circ_g.6
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0566100-00:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTGATAATACATGACATGGATTTCAACCCCCAGATGGATCGGCAAGCTGAAGATCGCTGCCA
TCGCATTGGACAACAGAAACCTGTCACTATCTATAGctattagtttcctatggtgattctggta
caaagggtgcccttacagatgagcatgttcttggatcagcaaagtgtcaggtgtggttttcccc
cattcctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATTAGTTTCCTATGGTGATTCTGGTACAAAGGGTGCCCTTACAGATGAGCATGTTCTTGGAT
CAGCAAAGTGTCAGGTGTGGTTTTCCCCCATTCCTTAAGGATTGTATATGTACAGTAATATCTT
CAGCAGAAATTGTCTTTAGGATTTAACAATTGAATTCCTTCATTTCTATGTTTTGTTCAGGCCT
TAGCTGAGCTTTTACCTTCCTTAGCAAATGATGGCCACAGAGTTCTCATATTCAGCCAATGGAC
GACAATGCTTGATATCCTTGAATGGACACTGGAAGTAATAGGAGTTACTTATAGACGTCTTGAT
GGGGGGTTAGTTTTTTTTCAGCATTTATTTTTGGAATTAAAATGTTTCTCAATCCTAAGCGATG
AAGTTCCTTCTGTTTCAGCACCCCAGTAACTGAAAGGCAGACTATAGTCGACACTTTCAATAAC
GACCGATCTATATTTGCATGTTTGCTTTCCACAAGAGCTGGAGGCCAGGGTCTGAATTTAATAG
GAGCTGATACAGTGATAATACATGACATGGATTTCAACCCCCAGATGGATCGGCAAGCTGAAGA
TCGCTGCCATCGCATTGGACAACAGAAACCTGTCACTATCTATAG
Conservation Information
Conserved circRNAs NA
PMCS 0.321018961
Functional Information
Coding potential Y
Potential coding position 28384412-28384154(+)
28384685-28384167(+)
Potential amino acid sequence MLDILEWTLEVIGVTYRRLDGGTPVTERQTIVDTFNNDRSIFACLLSTRAGGQGLNLIGADTVI
IHDMDFNPQMDRQAEDRCHRIGQQKPVTIYSY*(+)
MTWISTPRWIGKLKIAAIALDNRNLSLSIAISFLW*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017