Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0566100_circ_g.3 |
ID in PlantcircBase | osa_circ_024901 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 28384151-28384771 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0566100 |
Parent gene annotation |
Similar to OSIGBa0158F05.11 protein. (Os04t0566100-00) |
Parent gene strand | + |
Alternative splicing | Os04g0566100_circ_igg.1 Os04g0566100_circ_g.2 Os04g0566100_circ_igg.4 Os04g0566100_circ_g.5 Os04g0566100_circ_g.6 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os04t0566100-00:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.321018961 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
28384412-28384154(+) 28384685-28384167(+) |
Potential amino acid sequence |
MLDILEWTLEVIGVTYRRLDGGTPVTERQTIVDTFNNDRSIFACLLSTRAGGQGLNLIGADTVI IHDMDFNPQMDRQAEDRCHRIGQQKPVTIYSY*(+) MTWISTPRWIGKLKIAAIALDNRNLSLSIAISFLW*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |