Detail information of Os04g0566100_circ_g.5


General Information
CircRNA Name Os04g0566100_circ_g.5
ID in PlantcircBase osa_circ_024903
Alias Os_ciR9510
Organism Oryza sativa
Position chr4: 28384383-28384513  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method find_circ
Parent gene Os04g0566100
Parent gene annotation Similar to OSIGBa0158F05.11 protein. (Os04t0566100-00)
Parent gene strand +
Alternative splicing Os04g0566100_circ_igg.1 Os04g0566100_circ_g.2 Os04g0566100_circ_g.3 Os04g0566100_circ_igg.4 Os04g0566100_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os04t0566100-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTACTTATAGACGTCTTGATGGGGGGTTAGTTTTTTTTCAGCATTTATTTTTGGAATTAAAA
Tagttctcatattcagccaatggacgacaatgcttgatatccttgaatggacactggaagtaat
agg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTTCTCATATTCAGCCAATGGACGACAATGCTTGATATCCTTGAATGGACACTGGAAGTAATA
GGAGTTACTTATAGACGTCTTGATGGGGGGTTAGTTTTTTTTCAGCATTTATTTTTGGAATTAA
AAT
Conservation Information
Conserved circRNAs NA
PMCS 0.313616285
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015