Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G06820_circ_g.3 |
ID in PlantcircBase | ath_circ_001055 |
Alias | At_ciR4956, Ath_circ_FC0220, Ath_circ_FC5549 |
Organism | Arabidpsis thaliana |
Position | chr1: 2093793-2094967 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G06820 |
Parent gene annotation |
Prolycopene isomerase, chloroplastic |
Parent gene strand | - |
Alternative splicing | AT1G06820_circ_g.1 AT1G06820_circ_g.2 AT1G06820_circ_g.4 AT1G06820_circ_g.5 AT1G06820_circ_g.6 AT1G06820_circ_g.7 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G06820.2:6 AT1G06820.1:6 AT1G06820.3:6 AT1G06820.4:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.1860027 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2094929-2093795(-) |
Potential amino acid sequence |
MINASMVLCDRHYGGINYPVGGVGGIAKSLAEGLVDQGSEIQYKANVKSIILDHGKAVGVRLAD GREFFAKTIISNATRWDTFGKLLKGEKLPKEEENFQKVYVKAPSFLSIHMGVKAEVLPPDTDCH HFVLEDDWKNLEEPYGSIFLSIPTILDSSLAPDGRHILHIFTTSSIEDWEGLPPKEYEAKKEDV AARIIQRLEKKLFPGLSSSITFKECFIVSTVNALQTPMINASMVLCDRHYGGINYPVGGVGGIA KSLAEGLVDQGSEIQYKANVKSIILDHGKAVGVRLADGREFFAKTIISNATRWDTFGKLLKGEK LPKEEENFQKVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWKNLEEPYGSIFLSIPTILD SSLAPDGRHILHIFTTSSIEDWEGLPPKEYEAKKEDVAARIIQRLEKKLFPGLSSSITFKECFI VSTVNALQTPMINASMVLCDRHYGGINYPVGGVGGIAKSLAEGLVDQGSEIQYKANVKSIILDH GKAVGVRLADGREFFAKTIISNATRWDTFGKLLKGEKLPKEEENFQKVYVKAPSFLSIHMGVKA EVLPPDTDCHHFVLEDDWKNLEEPYGSIFLSIPTILDSSLAPDGRHILHIFTTSSIEDWEGLPP KEYEAKKEDVAARIIQRLEKKLFPGLSSSITFKECFIVSTVNALQTPMINASMVLCDRHYGGIN YPVGGVGGIAKSLAEGLVDQGSEIQYKANVKSIILDHGKAVGVRLADGREFFAKTIISNATRWD TFGKLLKGEKLPKEEENFQKVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWKNLEEPYGS IFLSIPTILDSSLAPDGRHILHIFTTSSIEDWEGLPPKEYEAKKEDVAARIIQRLEKKLFPGLS SSITFKE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chen et al., 2017a |