Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G06820_circ_g.6 |
ID in PlantcircBase | ath_circ_001058 |
Alias | 1:2095069-2095408 |
Organism | Arabidpsis thaliana |
Position | chr1: 2095069-2095408 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT1G06820 |
Parent gene annotation |
Prolycopene isomerase, chloroplastic |
Parent gene strand | - |
Alternative splicing | AT1G06820_circ_g.1 AT1G06820_circ_g.2 AT1G06820_circ_g.3 AT1G06820_circ_g.4 AT1G06820_circ_g.5 AT1G06820_circ_g.7 |
Support reads | 1/1/1/1/2/1/3/1/4/1/1/1 |
Tissues | seedling;root;leaf;flower |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G06820.2:2 AT1G06820.4:2 AT1G06820.3:2 AT1G06820.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.44484323 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |