Plant Circular RNA Database

Detail information of Zm00001d041889_circ_g.8

			
				
						 General Information
					

				
						CircRNA Name
						Zm00001d041889_circ_g.8
					

						ID in PlantcircBase
						zma_circ_007661
					

						Alias
						zma_circ_0001179
					

						Organism
						
							Zea mays						
					

						Position
						
							chr3: 142437649-142439111  JBrowse»						
					

						Reference genome
						
							AGPv4.38						
					

						Type  
						
							ui-circRNA							
									
								

					

						Identification method
						find_circ
					

						Parent gene
						
							Zm00001d041889						
					

						Parent gene annotation
						
							protein_coding
							
					

						Parent gene strand
						+
					

						Alternative splicing
						
							Zm00001d041889_circ_g.1 Zm00001d041889_circ_g.2 Zm00001d041889_circ_g.3 Zm00001d041889_circ_g.4 Zm00001d041889_circ_g.5 Zm00001d041889_circ_g.6 Zm00001d041889_circ_g.7 Zm00001d041889_circ_g.9 Zm00001d041889_circ_g.10 Zm00001d041889_circ_g.11 Zm00001d041889_circ_g.12 Zm00001d041889_circ_g.13 Zm00001d041889_circ_g.14 Zm00001d041889_circ_g.15 Zm00001d041889_circ_g.16 Zm00001d041889_circ_g.17 Zm00001d041889_circ_g.18 Zm00001d041889_circ_g.19 						
					

						Support reads
						NA
					

						Tissues
						leaf, root
					

						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

					

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

					

						Number of exons covered
						Zm00001d041889_T042:5
Zm00001d041889_T087:5
Zm00001d041889_T034:4
Zm00001d041889_T142:3
Zm00001d041889_T001:5
Zm00001d041889_T005:5
Zm00001d041889_T062:5
Zm00001d041889_T021:4
Zm00001d041889_T064:5
Zm00001d041889_T099:3
Zm00001d041889_T036:5
Zm00001d041889_T143:3
Zm00001d041889_T113:5
Zm00001d041889_T077:4
Zm00001d041889_T114:4
Zm00001d041889_T065:5
Zm00001d041889_T016:5
Zm00001d041889_T073:4
Zm00001d041889_T144:3
Zm00001d041889_T138:5
Zm00001d041889_T012:5
Zm00001d041889_T003:5
Zm00001d041889_T002:5
Zm00001d041889_T070:5
Zm00001d041889_T051:5
Zm00001d041889_T059:5
Zm00001d041889_T141:4
Zm00001d041889_T135:5
Zm00001d041889_T132:5
Zm00001d041889_T019:6
Zm00001d041889_T147:1
Zm00001d041889_T054:5
Zm00001d041889_T134:5
Zm00001d041889_T089:5
Zm00001d041889_T082:5
Zm00001d041889_T146:1
Zm00001d041889_T115:4
Zm00001d041889_T137:5
Zm00001d041889_T139:5
Zm00001d041889_T075:3
Zm00001d041889_T061:5
Zm00001d041889_T022:5
Zm00001d041889_T047:4
Zm00001d041889_T094:5
Zm00001d041889_T085:3
Zm00001d041889_T018:5
Zm00001d041889_T083:5
Zm00001d041889_T145:4
Zm00001d041889_T066:5
Zm00001d041889_T057:4
Zm00001d041889_T131:5
Zm00001d041889_T079:5
Zm00001d041889_T086:4
Zm00001d041889_T025:5
Zm00001d041889_T103:5
Zm00001d041889_T068:4
Zm00001d041889_T010:3
Zm00001d041889_T101:3
Zm00001d041889_T102:2
Zm00001d041889_T029:3
Zm00001d041889_T136:5
Zm00001d041889_T107:4
Zm00001d041889_T039:3
Zm00001d041889_T033:5
Zm00001d041889_T007:5
Zm00001d041889_T129:5
Zm00001d041889_T116:3
Zm00001d041889_T096:5
Zm00001d041889_T106:5
Zm00001d041889_T140:2
Zm00001d041889_T031:3
Zm00001d041889_T117:5
Zm00001d041889_T092:5
Zm00001d041889_T081:5
Zm00001d041889_T027:5
Zm00001d041889_T048:5
Zm00001d041889_T035:5
Zm00001d041889_T108:5
Zm00001d041889_T041:5
Zm00001d041889_T045:3
Zm00001d041889_T049:4
Zm00001d041889_T090:4
Zm00001d041889_T097:5
Zm00001d041889_T014:5

					

			
		

General Information
CircRNA Name	Zm00001d041889_circ_g.8
ID in PlantcircBase	zma_circ_007661
Alias	zma_circ_0001179
Organism	Zea mays
Position	chr3: 142437649-142439111 JBrowse»
Reference genome	AGPv4.38
Type	ui-circRNA
Identification method	find_circ
Parent gene	Zm00001d041889
Parent gene annotation	protein_coding
Parent gene strand	+
Alternative splicing	Zm00001d041889_circ_g.1 Zm00001d041889_circ_g.2 Zm00001d041889_circ_g.3 Zm00001d041889_circ_g.4 Zm00001d041889_circ_g.5 Zm00001d041889_circ_g.6 Zm00001d041889_circ_g.7 Zm00001d041889_circ_g.9 Zm00001d041889_circ_g.10 Zm00001d041889_circ_g.11 Zm00001d041889_circ_g.12 Zm00001d041889_circ_g.13 Zm00001d041889_circ_g.14 Zm00001d041889_circ_g.15 Zm00001d041889_circ_g.16 Zm00001d041889_circ_g.17 Zm00001d041889_circ_g.18 Zm00001d041889_circ_g.19
Support reads	NA
Tissues	leaf, root
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d041889_T042:5 Zm00001d041889_T087:5 Zm00001d041889_T034:4 Zm00001d041889_T142:3 Zm00001d041889_T001:5 Zm00001d041889_T005:5 Zm00001d041889_T062:5 Zm00001d041889_T021:4 Zm00001d041889_T064:5 Zm00001d041889_T099:3 Zm00001d041889_T036:5 Zm00001d041889_T143:3 Zm00001d041889_T113:5 Zm00001d041889_T077:4 Zm00001d041889_T114:4 Zm00001d041889_T065:5 Zm00001d041889_T016:5 Zm00001d041889_T073:4 Zm00001d041889_T144:3 Zm00001d041889_T138:5 Zm00001d041889_T012:5 Zm00001d041889_T003:5 Zm00001d041889_T002:5 Zm00001d041889_T070:5 Zm00001d041889_T051:5 Zm00001d041889_T059:5 Zm00001d041889_T141:4 Zm00001d041889_T135:5 Zm00001d041889_T132:5 Zm00001d041889_T019:6 Zm00001d041889_T147:1 Zm00001d041889_T054:5 Zm00001d041889_T134:5 Zm00001d041889_T089:5 Zm00001d041889_T082:5 Zm00001d041889_T146:1 Zm00001d041889_T115:4 Zm00001d041889_T137:5 Zm00001d041889_T139:5 Zm00001d041889_T075:3 Zm00001d041889_T061:5 Zm00001d041889_T022:5 Zm00001d041889_T047:4 Zm00001d041889_T094:5 Zm00001d041889_T085:3 Zm00001d041889_T018:5 Zm00001d041889_T083:5 Zm00001d041889_T145:4 Zm00001d041889_T066:5 Zm00001d041889_T057:4 Zm00001d041889_T131:5 Zm00001d041889_T079:5 Zm00001d041889_T086:4 Zm00001d041889_T025:5 Zm00001d041889_T103:5 Zm00001d041889_T068:4 Zm00001d041889_T010:3 Zm00001d041889_T101:3 Zm00001d041889_T102:2 Zm00001d041889_T029:3 Zm00001d041889_T136:5 Zm00001d041889_T107:4 Zm00001d041889_T039:3 Zm00001d041889_T033:5 Zm00001d041889_T007:5 Zm00001d041889_T129:5 Zm00001d041889_T116:3 Zm00001d041889_T096:5 Zm00001d041889_T106:5 Zm00001d041889_T140:2 Zm00001d041889_T031:3 Zm00001d041889_T117:5 Zm00001d041889_T092:5 Zm00001d041889_T081:5 Zm00001d041889_T027:5 Zm00001d041889_T048:5 Zm00001d041889_T035:5 Zm00001d041889_T108:5 Zm00001d041889_T041:5 Zm00001d041889_T045:3 Zm00001d041889_T049:4 Zm00001d041889_T090:4 Zm00001d041889_T097:5 Zm00001d041889_T014:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TAATGACAGAATAGCTGAAGAGACTGATAAAGGTACAACCGAATTAATCCTGCCCAGACTGACC
TAGAAATTAAGTTAAACGATGAACTTGCTGATCCGGaccatgaagagcaaagccctgtatccgg
agaacggagagttagcttggaagcaaatgccaacgagcctgaggaaaagaacctagctaacgtc
atatcaat

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							ACCATGAAGAGCAAAGCCCTGTATCCGGAGAACGGAGAGTTAGCTTGGAAGCAAATGCCAACGA
GCCTGAGGAAAAGAACCTAGCTAACGTCATATCAATTGATCTCCACACCAAAAGTCTGCAGCAT
GATAATGGCAGAATAGCTGAAGAGACTGATAAAGGTACAACTGAATTAATCCTGTATCCCCAAT
AAAAGCTCTGCAACATTGATGAGTGAAGATAATATGTATGCTGAACATCTAAATCCACCTGTGC
CAGCTCTCATTCACTGTTTTTTTCTAAAGATCTTGCTTCAAGATTTTCAATTCACTAAATTAAA
CTTGCTAAATCTCCAGATGTTTTGTCTTTTGTTTTCCCTATTGAAGAGCATGAAGAAAAATATG
CAGTTAGCCCTATAGCCGTTGAAAAGAGCTTCCGTCAGGAAGCAAGTGCAATTGAATCTGCAGG
AAAACCCCTAACTGTCATCTTTTCTAACGATCTCCACACCAAACATCTGCAACATGATTGTGAT
GTGCTAATTAAGGAGACTGGTGAAGGTAATATTGCATTAATACTTGTTCCACAACTTGTTACTG
ATCTGCGGAGATGGTGATGAAAACTTGTGCTGTTTGCACTGTGTTGACATTTTTTAAATGTATT
CTTTCCCTTTCTCAGAAGTTTTAGCTCAGGAGAATTGTAATGACCAGCCTGTTCCTGCCCAGAC
CGACCTAGAAATTAAGTTAAATGATGAACTTGCTGATCCGGGTATGGACCGTGTTTAATTTACC
AATTTTAAACATACCGAGTTCTAAGTCAAGTTGTTGGCTACTTGTAATTCTAATTGTTTTTAAT
AGGCTTTATATTTATTCTATCTGCAAAAGCTAGGCATATGTTTCATTGTCATTTGATGTCTTTT
AAGTATCTGACATTTATTTTTTAAATGTATTCTTTCCCTTTATCAGATGTTTTAGCTCAGGAGA
ATTGTAATGACCAGCCTGTTCCTGCCAACGAGCCTGAGGAAAAGAACCTAGCTAACGTCATATC
AACTGATCTCCACACCAAAACTCTGCAGCATGATAATGACAGAATAGCTGAAGAGACTGATAAA
GGTACAACCGAATTAATCCTGCCCAGACTGACCTAGAAATTAAGTTAAACGATGAACTTGCTGA
TCCGGGTATGGACTGTGTTTAATTTACCAATTTTAAACATACTGCAGAGTTTTGGTTTATCAAT
TAGTTTCACTGTTGCAGACCATGAAGAGCAAAGCAATGTGTTCGGAGAACGGAGAGTTAGCTTG
GAAGCAAATGCCAACGAGCCTGAGGAAAAGAACCTAGCTAACGTCATATCAACTGATCTCCACA
CCAAAACTCTGCAGCATGATAATGACAGAATAGCTGAAGAGACTGATAAAGGTACAACCGAATT
AATCCTGCCCAGACTGACCTAGAAATTAAGTTAAACGATGAACTTGCTGATCCGG

Sequences
Splice junction sequence	TAATGACAGAATAGCTGAAGAGACTGATAAAGGTACAACCGAATTAATCCTGCCCAGACTGACC TAGAAATTAAGTTAAACGATGAACTTGCTGATCCGGaccatgaagagcaaagccctgtatccgg agaacggagagttagcttggaagcaaatgccaacgagcctgaggaaaagaacctagctaacgtc atatcaat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ACCATGAAGAGCAAAGCCCTGTATCCGGAGAACGGAGAGTTAGCTTGGAAGCAAATGCCAACGA GCCTGAGGAAAAGAACCTAGCTAACGTCATATCAATTGATCTCCACACCAAAAGTCTGCAGCAT GATAATGGCAGAATAGCTGAAGAGACTGATAAAGGTACAACTGAATTAATCCTGTATCCCCAAT AAAAGCTCTGCAACATTGATGAGTGAAGATAATATGTATGCTGAACATCTAAATCCACCTGTGC CAGCTCTCATTCACTGTTTTTTTCTAAAGATCTTGCTTCAAGATTTTCAATTCACTAAATTAAA CTTGCTAAATCTCCAGATGTTTTGTCTTTTGTTTTCCCTATTGAAGAGCATGAAGAAAAATATG CAGTTAGCCCTATAGCCGTTGAAAAGAGCTTCCGTCAGGAAGCAAGTGCAATTGAATCTGCAGG AAAACCCCTAACTGTCATCTTTTCTAACGATCTCCACACCAAACATCTGCAACATGATTGTGAT GTGCTAATTAAGGAGACTGGTGAAGGTAATATTGCATTAATACTTGTTCCACAACTTGTTACTG ATCTGCGGAGATGGTGATGAAAACTTGTGCTGTTTGCACTGTGTTGACATTTTTTAAATGTATT CTTTCCCTTTCTCAGAAGTTTTAGCTCAGGAGAATTGTAATGACCAGCCTGTTCCTGCCCAGAC CGACCTAGAAATTAAGTTAAATGATGAACTTGCTGATCCGGGTATGGACCGTGTTTAATTTACC AATTTTAAACATACCGAGTTCTAAGTCAAGTTGTTGGCTACTTGTAATTCTAATTGTTTTTAAT AGGCTTTATATTTATTCTATCTGCAAAAGCTAGGCATATGTTTCATTGTCATTTGATGTCTTTT AAGTATCTGACATTTATTTTTTAAATGTATTCTTTCCCTTTATCAGATGTTTTAGCTCAGGAGA ATTGTAATGACCAGCCTGTTCCTGCCAACGAGCCTGAGGAAAAGAACCTAGCTAACGTCATATC AACTGATCTCCACACCAAAACTCTGCAGCATGATAATGACAGAATAGCTGAAGAGACTGATAAA GGTACAACCGAATTAATCCTGCCCAGACTGACCTAGAAATTAAGTTAAACGATGAACTTGCTGA TCCGGGTATGGACTGTGTTTAATTTACCAATTTTAAACATACTGCAGAGTTTTGGTTTATCAAT TAGTTTCACTGTTGCAGACCATGAAGAGCAAAGCAATGTGTTCGGAGAACGGAGAGTTAGCTTG GAAGCAAATGCCAACGAGCCTGAGGAAAAGAACCTAGCTAACGTCATATCAACTGATCTCCACA CCAAAACTCTGCAGCATGATAATGACAGAATAGCTGAAGAGACTGATAAAGGTACAACCGAATT AATCCTGCCCAGACTGACCTAGAAATTAAGTTAAACGATGAACTTGCTGATCCGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.501466801

Conservation Information
Conserved circRNAs	NA
PMCS	0.501466801

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021b

circRNA

Detail information of Zm00001d041889_circ_g.8

Address

Any questions?

Supported by