Detail information of Os03g0262200_circ_g.3


General Information
CircRNA Name Os03g0262200_circ_g.3
ID in PlantcircBase osa_circ_018975
Alias Os_ciR3896
Organism Oryza sativa
Position chr3: 8573783-8575239  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0262150
Parent gene annotation Hypothetical gene. (Os03t0262150-01)
Parent gene strand +
Alternative splicing Os03g0262200_circ_g.2 Os03g0262200_circ_g.4 Os03g0262200_circ_g.5
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0262200-00:5
Os03t0262150-01:5
Os03t0262200-00:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCTGAAACATGAGTATCTCGCAGTCTGTACTTCTGATACAAAGATGCAAGAGATCCTTGGGT
GACTAATTCAAGGAAGATGTACAGTTTTGAGTCCTCcattccaccgatattctgaagccgtcct
caattctatccatttatgccgcgtaccgatgaatttgagcgcgaagatgtcctcatagacctta
tcgaccgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 663
Transcript exons: 8573783-8574043,8574185-8574292,8574636-8574695,8574806-
8574881,8575082-8575239
CATTCCACCGATATTCTGAAGCCGTCCTCAATTCTATCCATTTATGCCGCGTACCGATGAATTT
GAGCGCGAAGATGTCCTCATAGACCTTATCGACCGCATTGACCTATTAACGAAAGGATGCTCCA
GCAGCTTTGCTGCAGAGGGTCTGTCTTGCGGATTGGGTTTTACGCACTGGCTTATAAAATCACG
AGCATCCCTAGAAAGGCAATTTGGAATTGCTGGTGGTTCCCCCTTCCCAATCCTGTATAAAGCT
TGTGTCCATTCCAGACCAGGATAGGGAAGTTGACGTGTCAACATCTCTAGGACTGTGCAGCCCA
GACTCCATATATCAGCTTCAGGTCCATATGTTGTCTTGGGATTGACAACCTCAGGTGCCATCCA
ATAAACAGTTCCTTTGCACGATTTAAGCACGTTGAATTTGGTAATCTCCTTAGCAAGACCAAAG
TCAGCAAGTTTCACGGATCCATTGGCATGCACCAATATATTGGCACATTTGATATCCCTATGAA
CAATGTTTCGCTCATGCAGGTAAGTCAACCCATTAAGAATCTGTCTTGTATATGCTGAAACATG
AGTATCTCGCAGTCTGTACTTCTGATACAAAGATGCAAGAGATCCTTGGGTGACTAATTCAAGG
AAGATGTACAGTTTTGAGTCCTC

Genomic sequence CATTCCACCGATATTCTGAAGCCGTCCTCAATTCTATCCATTTATGCCGCGTACCGATGAATTT
GAGCGCGAAGATGTCCTCATAGACCTTATCGACCGCATTGACCTATTAACGAAAGGATGCTCCA
GCAGCTTTGCTGCAGAGGGTCTGTCTTGCGGATTGGGTTTTACGCACTGGCTTATAAAATCACG
AGCATCCCTAGAAAGGCAATTTGGAATTGCTGGTGGTTCCCCCTTCCCAATCCTGTATAAAGCT
TGTGTCTGCAGAACAAGTTGAGAAAATGGGGTAAATGCAAAAAGGAAACAAAGTAATATGCATA
CTGGATAATTATCAAACTTGGAACCAACACCATAACTGAATTTGGAGGAGCTAAATTAGATTCC
TGATGAACAATAACTCACCCATTCCAGACCAGGATAGGGAAGTTGACGTGTCAACATCTCTAGG
ACTGTGCAGCCCAGACTCCATATATCAGCTTCAGGTCCATATGTTGTCTTGGGATTGACAACCT
GAAATTTCATCATTATCTTAGGAGGCAACTACAACATTATCTAACATCAATGCATTATAAACAC
ATTTTTGGCTTTTTACCTCCTACCTATTAGTTTGTTATTCTAGATAAACCATCAAAATAAAAGA
AGGTAAACAAATACTACCTCTGTTTCAAGTTATAAGATTTTCTAGTATTGCCTACATTCATATA
TATGTTAATGAATCTAGATATATATGTGTGCCTAGATTCATTAACATCTATATGAATGTGGGCA
ATGCTAGAAAATCTTATAATATGAAACGGAGGAAGTAAAACCCAAGCATGTCCAAATCTAATCT
AATAGAAATATTGTGCCATACCTCAGGTGCCATCCAATAAACAGTTCCTTTGCACGATTTAAGC
ACGTTGAATTTGGTAATCTGAGAGATTTGACAGAAATCAATCATATAAATGAGATAAATTTTAA
AATAATAACTGAAACATTCAAAGATTAAAAAGGAACATAAAGATTTCGCGAGAGTAAGCAGACC
TCCTTAGCAAGACCAAAGTCAGCAAGTTTCACGGATCCATTGGCATGCACCAATATATTGGCAC
ATTTGATATCCCTGCAAGACGAGATTTGAACTGTTATTCACTTATTCAGAATAAATGTACAGTA
CCAGTTCCTTAAGAATCTTCAAGCTAACGATAAAAATCAGTGAGCAGGCATTAATTAGAATAAC
TGTCAGCTGAAGTGAAAAAAAAAAACAATAAGCCTCCTTAGAAGGCTAAACAGCAGATATGCTG
ATTCAACTAATGTTATTACCTATGAACAATGTTTCGCTCATGCAGGTAAGTCAACCCATTAAGA
ATCTGTCTTGTATATGCTGAAACATGAGTATCTCGCAGTCTGTACTTCTGATACAAAGATGCAA
GAGATCCTTGGGTGACTAATTCAAGGAAGATGTACAGTTTTGAGTCCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.34680693
Functional Information
Coding potential Y
Potential coding position 8573787-8573818(-)
8573825-8575208(-)
Potential amino acid sequence MEDSKLYIFLELVTQGSLASLYQKYRLRDTHVSAYTRQILNGLTYLHERNIVHRDIKCANILVH
ANGSVKLADFGLAKEITKFNVLKSCKGTVYWMAPEVVNPKTTYGPEADIWSLGCTVLEMLTRQL
PYPGLEWTQALYRIGKGEPPAIPNCLSRDARDFISQCVKPNPQDRPSAAKLLEHPFVNRSMRSI
RSMRTSSRSNSSVRGING*(-)
MDRIEDGFRISVEWRTQNCTSSLN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017