Detail information of Os04g0523100_circ_g.4


General Information
CircRNA Name Os04g0523100_circ_g.4
ID in PlantcircBase osa_circ_024610
Alias NA
Organism Oryza sativa
Position chr4: 26170781-26171931  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0523100
Parent gene annotation Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein. (Os04t0523100-
01);Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein. (Os04t0523
100-02)
Parent gene strand -
Alternative splicing Os04g0523100_circ_g.1 Os04g0523100_circ_g.2 Os04g0523100_circ_g.3
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0523100-01:2
Os04t0523100-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCTAGCCACTGACACTTCATTGCGACATCTCTCACAGTCTTGCTTGGTAATGAAGCTGCTATC
TTTATATACTTCATGATGCCTTGTTCATTTCCATATctttctttctttcatctttcttccagtg
tgatggtcttcagacttccgccgccttgaattttctcttttctgcaagagaaccaaatcattat
tattatta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCTTTCTTTCATCTTTCTTCCAGTGTGATGGTCTTCAGACTTCCGCCGCCTTGAATTTTCT
CTTTTCTGCAAGAGAACCAAATCATTATTATTATTATTAAAAATAAAAAAAAGAACTACTAATA
AAAGAAAATAAAGTACTAGGTCAGCTAGGAAACGCACACGCGCATCTTAAATATATATAACTGT
TGTTTAGTTAGCTATATTCTTAATAAAACTTTTGAAGAATATAAAGCCCATTTTGATTTTATCA
CAAACAATATACTGATCCAAAGAGGAACCACACCTTTAGTTTTCAGTACAGTATCAGACAATAT
TTTTTTTTGCCGGGTCAGCCGAAGGAACCGGCGACCAAATTTCATTAAGATTGAGAGGAATAAA
ATCAAAGTACAAGTAGTTTTCGCTTGCAACGACAGGAGGCTGTCGAATTAGACTGTGGCAGGAA
CCATAGCCCGGCAAACTAAAAAAAAAAACTGGAACGCCAACACAATAGAAAGAAAACTAAGAAC
TGCAGTATCAGACAATAATTCAGGCAATTGCCTAGTCAGCTATCGTAACTAATAATATGGTGGG
TCCAAAAGATATATCACTGGCAAAAAGATATATGCATGTTTTTTATAAAAAAAAATGGTATAAG
AATGTGCTGTCTTTTGATCTACCTTTTTTCCTTTTGGACAATACAAATGTATATCAATATAATA
ACAGCCCACAAGGAGAAATTGATTGCCAACTCATGTCTCAATATGACTATGGTCCAAAATGTGC
AACTTTCGCATTTATGTACATAATCATTGAGAAGAAGTGTATCTATCATTCATATTAGCATATT
CAGAGAAAAAAAATGAGGCATAGCAAGCCCCATCCAAAAACTGCTCAAGGAGAAAAGGGAATAT
TGTCTGCCTGAACGGTTGTACCTAAGGGAATATTGTCAATTATGTAACGAGCAAACCTCAAACA
GAAGGCATCCTTGTAATCGGGAAAGGGAATGCAGATATTATGTTCGAGTGACTACAACTTACAG
AGTATATACATATTAGAGATTGCTTACCCCTAGCCACTGACACTTCATTGCGACATCTCTCACA
GTCTTGCTTGGTAATGAAGCTGCTATCTTTATATACTTCATGATGCCTTGTTCATTTCCATAT
Conservation Information
Conserved circRNAs NA
PMCS 0.11290383
Functional Information
Coding potential Y
Potential coding position 26171909-26170834(+)
26171911-26171922(-)
Potential amino acid sequence MMPCSFPYLSFFHLSSSVMVFRLPPP*(+)
MKYIKIAASLPSKTVRDVAMKCQWLGKRENSRRRKSEDHHTGRKMKERKIWK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017