Detail information of Os04g0523100_circ_g.1


General Information
CircRNA Name Os04g0523100_circ_g.1
ID in PlantcircBase osa_circ_024607
Alias Os_ciR3026
Organism Oryza sativa
Position chr4: 26169815-26170298  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os04g0523100
Parent gene annotation Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein. (Os04t0523100-
01);Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein. (Os04t0523
100-02)
Parent gene strand -
Alternative splicing Os04g0523100_circ_g.2 Os04g0523100_circ_g.3 Os04g0523100_circ_g.4
Support reads 4/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0523100-02:1
Os04t0523100-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTGTTTTGAATGGCATTATGTGACACAAACGAAGGAACTCTTGTGTCCGTCTGAACTGGATG
ATTGGTACCCCATAAGGAAGGCTCGGCCATTTTAGCctgacatgctagcatatttgcttcaatc
tgatcaagaagtcgatcattttgtactagtaattgctgcattgcacgatctatttcagtggctg
catgttag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGACATGCTAGCATATTTGCTTCAATCTGATCAAGAAGTCGATCATTTTGTACTAGTAATTGC
TGCATTGCACGATCTATTTCAGTGGCTGCATGTTAGAAAAATACGCACATGGTCAAATTAAGGA
ACATATATGTAATATGTGTATGAAAAGTCATCAGCTTAATCTTGTCAAAAACCAGTTCTTATGA
ATCTTTCCATCAGCGCATAATTCTAATATCTTATTTAAATTGCATCTGCTAATCCGTTAATTTA
TTATTTACTCTCCCAAGAGCATAATCGAAATGAAGGATTATCATGCGTTGGACCCACAGCAGAT
GGTTTTACATTCTAGAAAAATGGACCTGATACTCAAGTGACCTACCAACCTCCAGTTAGAATTT
GGTTGTTTTGAATGGCATTATGTGACACAAACGAAGGAACTCTTGTGTCCGTCTGAACTGGATG
ATTGGTACCCCATAAGGAAGGCTCGGCCATTTTAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.115381543
Functional Information
Coding potential Y
Potential coding position 26170294-26169817(-)
Potential amino acid sequence MAEPSLWGTNHPVQTDTRVPSFVSHNAIQNNQILTGATEIDRAMQQLLVQNDRLLDQIEANMLA
CQAKMAEPSLWGTNHPVQTDTRVPSFVSHNAIQNNQILTGATEIDRAMQQLLVQNDRLLDQIEA
NMLACQAKMAEPSLWGTNHPVQTDTRVPSFVSHNAIQNNQILTGATEIDRAMQQLLVQNDRLLD
QIEANMLACQAKMAEPSLWGTNHPVQTDTRVPSFVSHNAIQNNQILTGATEIDRAMQQLLVQND
RLLDQIEANMLACQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017