Detail information of Os04g0523100_circ_g.3


General Information
CircRNA Name Os04g0523100_circ_g.3
ID in PlantcircBase osa_circ_024609
Alias Os_ciR9466
Organism Oryza sativa
Position chr4: 26170184-26171931  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os04g0523100
Parent gene annotation Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein. (Os04t0523100-
01);Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein. (Os04t0523
100-02)
Parent gene strand -
Alternative splicing Os04g0523100_circ_g.1 Os04g0523100_circ_g.2 Os04g0523100_circ_g.4
Support reads 2/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0523100-01:3
Os04t0523100-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCTAGCCACTGACACTTCATTGCGACATCTCTCACAGTCTTGCTTGGTAATGAAGCTGCTATC
TTTATATACTTCATGATGCCTTGTTCATTTCCATATctccagttagaatttggttgttttgaat
ggcattatgtgacacaaacgaaggaactcttgtgtccgtctgaactggatgattggtaccccat
aaggaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCAGTTAGAATTTGGTTGTTTTGAATGGCATTATGTGACACAAACGAAGGAACTCTTGTGTC
CGTCTGAACTGGATGATTGGTACCCCATAAGGAAGGCTCGGCCATTTTAGCCTGAAAAAATAAC
CATTATTACACCAGTCAAAAACATGTGCATGAAGTACGAAATGCCCAGGGCTAAATAGTTAGGT
CTGCTATTTGTTATGTACTTCAAAACTTCTATTTTTGATAAATCAGTTAAAACAATTATAAGGC
TGAGTTCTTTCCCCAACTTTTCCAACTCACATTTCTCGTGTTCCGCTCGTACGCTTTTCAAACT
GCTAAACGGTGCGTTTTTTGTAAAAAGTTTCTTTACGAAAGTTGCTTAAAAAATCATATTGATC
TATTTTTGAAAAAAAAATAGTTAAAACTTAATTAATCACGTGCTAATAGACCGCTCCGTTTTCC
GTGGGCAGGAAATGGGTTCTCAACACACACAAAGGAACACAGCCTAAGTTGTTCAAATAGGACC
AATAGTTTTTTTTTTTTTGGAAACGGGGCTAAACGTGTTACTGAATCAGTTGCATTAATCAGAA
AACCATTAGGAACGTTAATACCTTTCTTTCTTTCATCTTTCTTCCAGTGTGATGGTCTTCAGAC
TTCCGCCGCCTTGAATTTTCTCTTTTCTGCAAGAGAACCAAATCATTATTATTATTATTAAAAA
TAAAAAAAAGAACTACTAATAAAAGAAAATAAAGTACTAGGTCAGCTAGGAAACGCACACGCGC
ATCTTAAATATATATAACTGTTGTTTAGTTAGCTATATTCTTAATAAAACTTTTGAAGAATATA
AAGCCCATTTTGATTTTATCACAAACAATATACTGATCCAAAGAGGAACCACACCTTTAGTTTT
CAGTACAGTATCAGACAATATTTTTTTTTGCCGGGTCAGCCGAAGGAACCGGCGACCAAATTTC
ATTAAGATTGAGAGGAATAAAATCAAAGTACAAGTAGTTTTCGCTTGCAACGACAGGAGGCTGT
CGAATTAGACTGTGGCAGGAACCATAGCCCGGCAAACTAAAAAAAAAAACTGGAACGCCAACAC
AATAGAAAGAAAACTAAGAACTGCAGTATCAGACAATAATTCAGGCAATTGCCTAGTCAGCTAT
CGTAACTAATAATATGGTGGGTCCAAAAGATATATCACTGGCAAAAAGATATATGCATGTTTTT
TATAAAAAAAAATGGTATAAGAATGTGCTGTCTTTTGATCTACCTTTTTTCCTTTTGGACAATA
CAAATGTATATCAATATAATAACAGCCCACAAGGAGAAATTGATTGCCAACTCATGTCTCAATA
TGACTATGGTCCAAAATGTGCAACTTTCGCATTTATGTACATAATCATTGAGAAGAAGTGTATC
TATCATTCATATTAGCATATTCAGAGAAAAAAAATGAGGCATAGCAAGCCCCATCCAAAAACTG
CTCAAGGAGAAAAGGGAATATTGTCTGCCTGAACGGTTGTACCTAAGGGAATATTGTCAATTAT
GTAACGAGCAAACCTCAAACAGAAGGCATCCTTGTAATCGGGAAAGGGAATGCAGATATTATGT
TCGAGTGACTACAACTTACAGAGTATATACATATTAGAGATTGCTTACCCCTAGCCACTGACAC
TTCATTGCGACATCTCTCACAGTCTTGCTTGGTAATGAAGCTGCTATCTTTATATACTTCATGA
TGCCTTGTTCATTTCCATAT
Conservation Information
Conserved circRNAs osi_circ_014578
PMCS 0.10338054
Functional Information
Coding potential Y
Potential coding position 26171909-26170294(+)
26171911-26171908(-)
Potential amino acid sequence MMPCSFPYLQLEFGCFEWHYVTQTKELLCPSELDDWYPIRKARPF*(+)
MKYIKIAASLPSKTVRDVAMKCQWLGKRENSRRRKSEDHHTGRKMKERKAKMAEPSLWGTNHPV
QTDTRVPSFVSHNAIQNNQILTGDMEMNKAS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017