Detail information of Os06g0154500_circ_g.3


General Information
CircRNA Name Os06g0154500_circ_g.3
ID in PlantcircBase osa_circ_042260
Alias NA
Organism Oryza sativa
Position chr6: 2809788-2812691  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0154500
Parent gene annotation Mitogen-activated protein kinase, Brassinosteroid (BR) signaling
and homeostasis, Regulation of grain size and plant height (Os0
6t0154500-01)
Parent gene strand -
Alternative splicing Os06g0154500_circ_g.1 Os06g0154500_circ_g.2 Os06g0154500_circ_g.4 Os06g0154500_circ_g.5
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-AT
Number of exons covered Os06t0154500-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGAGCAAACGAACCAGACGATGCCGTAGGCGCCCTTGCCGATGGGGAGGATGGGGGGCTTGTA
CTTGGCGGTGACCTCGAACACGTTCCCGAAGATGTTgaattcctttgtggaggaggtatgatat
cccttatggcaacaatctgcatcacataagtaggaagttgagacaagttattgccttttggagc
atcgatgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 260
Transcript exons: 2809788-2809831,2812389-2812518,2812606-2812691
GAATTCCTTTGTGGAGGAGGTATGATATCCCTTATGGCAACAATATTCTCGTGGTCCATGTGGC
GGAGCAGCTTGATCTCCCTGAGCGTGCGCTTGGCGTCGATCTTGTTGTCGAACGCGTTGGCGAT
CTTCTTGATCGCCACCTGCTCCCCCGTCTCCGAGTTGAGCGCCGAGCAGACGATGCCGTAGGCG
CCCTTGCCGATGGGGAGGATGGGGGGCTTGTACTTGGCGGTGACCTCGAACACGTTCCCGAAGA
TGTT

Genomic sequence GAATTCCTTTGTGGAGGAGGTATGATATCCCTTATGGCAACAATCTGCATCACATAAGTAGGAA
GTTGAGACAAGTTATTGCCTTTTGGAGCATCGATGTGCAAACACAAGAGCTTGCTGGATATGTG
AAATACAACAGACCAGCTCCAAATATCTTATAGGAGTAGATAAAATAAGTAAATCAACTATGTC
CAGACCAACCAAAGCAAGAACAAACATATTGCATGGACCAGGAAATACCATATGAAAATGACTT
GACAAAGAGATCTATCTTATTCATGATGGCTTAATGTTATAGCTCAAGTGTTTTTGCCATTTAA
ACGCTCAAACATGGTGGTTTTTTAAGGAGGCAGACCAACATGCATTTCCCTTAAAATGAAAATT
AGAGTGTGTAATGGGGATGAACAGCAAGCTAATGATGACTTGAATAGTGACTAGTAAAGGGCTT
TAGACGAAGATGGACATATAATAGATCAATAGAAGGAAGCAATGGAGGAGACTTTGCATAATTC
TAATAACTTATGTAGAGGATTCTAATAATTTATCTCATAGATAAGCTGAACAAACGTGTGTGTA
GCACAGTGGTAGAGTCTCTGGTAGAGGGGACACCGACCAAGGCTCAAGCCCAGGTTTTGCACAA
AAAAAATCCCCCCTCGTTAATGCTGGTAGAAGAGTGCTCCCCGCGTGAGGTTAAGCATGCCCAG
TGACGTGCCACGTTCAGGGGCATTTTTCTCGACTTAGCTGAATGCCGCAAGCCATCCTAACCAC
GGGCTTTTTTTGTTTGTTTGTTTTTTTATCTCATAGATAAGCTTACATGTACATAGAAAGCAAC
AGCTTAGTGCACTTCATAATTAAATGATAACTTGGTATTGAAGTAATATACTGCAGCCAGAAAT
CGCTACTCGGGCTGCTGCCTTCTGTCTGCAGCCAACCTGCAGCACGTGCACATGACAAAAAAAA
AGTTCCAATACATCTTTCAGAATACAGGATCGCCAATTTGGAAGTAATGTTTTATGTAATAATG
CAAAATAGCCATTTTTTGTGCAAGCTATATTTTAAAAGTAGAATTGGACTTGATGTACAAATCT
TAGCTCATGTTTCCAACTTTCCGTACATACAATTGAATTTATAGCCAGATTTGAAAAGTAGAAT
TTGACTTGATACACAATCTTAGCTGATGGCAATAAAGCAGGTGCATTATCTAAGGACTTCTACT
CCAAAATTTGCCTAATCCGATCGTTTTCTACAAACACCCGTAACTGGTATAACTCCCAAAAGCC
TCCCCTGCATAATTGGAGCACTAAAACCTGAAATTAAACACTTCTCTTTCTGCAGTAGGATACA
AACAAAATGGATCAGTTTTAGTTTGAAAAAACTTCCAAAAAAAGGCATGAGCATGCATTTGTGT
ATGCCTGTGTCAACCAGTCTATGGTTCAGCAAAAGCAGTATCTGAGCAACTTTTTGTATGAACC
TTTTTTAGGGAAGTATCAATTGATCTATTATGTTATAATAAAGAGGGTGCAAAAGGGTGCCACC
ACGTTCAATCTAGAAGCCTAGAATAACGACATTAATCGGGGAAAAAAGATAAATATATGCCCGT
TTATTATAGTGGTGGGTCTAGATTACAACGGTCCAGGTTGACCAGTAAATTCTATACAAAATAT
AACTCTAATTTTAAATCTAGCTCCTCTCATATTTGCATGGGAAAATCCACTAGTTTAATTATAA
CGGAATATTTATGACCATCCAAATTTAATTCACCTCTTCAGAAGAAGCTGAGTTTTTCTAGGGC
TGGCTATGAAGATATGGCCTATTCTCTAATTCACTTCCCCTGTGGCTGTCTTTCTACCACTAAC
CATAGAAAAAATATGTTGCCTCTGGTAAGCTGAAAATGATACTTCAGGCCTACGCAGGAAATAC
AACAGTGGGCTACTCCTATTAGTCAGTCTTTAAATTGGTAAATTTCAAAGGTCCAAGTCCAACA
TGCACACACAAAGTCAATCTCAAAACTTTCCAACAATAACACAATTCCTAGTACTCCTATCCCC
TAATTCCCTCCCCACTGGCAGTCACTCCCACTGCATTCAGACTGGATTTGACTGACTTAGGAAA
AAGGTGTAACACCAGATTGGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAAGCTAGTT
GTGGCTTGTGACATCAGCACGTACGAGAATCATGTGATGTTGCTACTCTCCAGGTCAGGTCTGT
TCACATCACTCGCTCCCCCACTATTCAAGAACACAATGAATAACAACATCCCCAAAAGGCAGAT
GGCTTCTTTAAAGGCATCTCCAAAGTTACCTCTATTTCTGAAGCTCGCAGCACTCATCATCAGC
AGCAAGAATGGAGGGAAAAGCTCTACCAAATTAGGCCGAGCAGTGACGAACTCAATCATTTGGT
AACCTAACCCTCACCTCCTCCTCCTTTCCCCATTTAATGCAACCAACTTAACTAACCAGAGACA
AGAGCATTCAACGAGAATCTCAAAATCTGCGCCTAAAAATCGAGGGTGGGTGGGGGGGAAGGGA
ATTCCGTGGTCGAAACAATGGAGCGGATCGGGAGCACTGACATTCTCGTGGTCCATGTGGCGGA
GCAGCTTGATCTCCCTGAGCGTGCGCTTGGCGTCGATCTTGTTGTCGAACGCGTTGGCGATCTT
CTTGATCGCCACCTGCTCCCCCGTCTCCGAGTTGAGCGCCGAGCTGTCATCCAAACCCAAAATC
CAAAATCCAAACCAAAATCAGGCCGCCGCCGCCAACGGAATGGGAGAGAGGGGGGAGCAAACGA
ACCAGACGATGCCGTAGGCGCCCTTGCCGATGGGGAGGATGGGGGGCTTGTACTTGGCGGTGAC
CTCGAACACGTTCCCGAAGATGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.11439924
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study