Detail information of Os06g0154500_circ_g.1


General Information
CircRNA Name Os06g0154500_circ_g.1
ID in PlantcircBase osa_circ_029731
Alias NA
Organism Oryza sativa
Position chr6: 2807790-2809831  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0154500
Parent gene annotation Mitogen-activated protein kinase, Brassinosteroid (BR) signaling
and homeostasis, Regulation of grain size and plant height (Os0
6t0154500-01)
Parent gene strand -
Alternative splicing Os06g0154500_circ_g.2 Os06g0154500_circ_g.3 Os06g0154500_circ_g.4 Os06g0154500_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0154500-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATTTGATGCAGATCAGTATCCATCAATTCATATGCAATATAAACGTCATTGAATGAATTCCT
TTGTGGAGGAGGTATGATATCCCTTATGGCAACAATctgttattctctgtctaggatcaaatgt
cagcatcttttcaaccagatcaattgctaaaggatgaacatgtggaaatttttcaggaaaggac
tgccttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTATTCTCTGTCTAGGATCAAATGTCAGCATCTTTTCAACCAGATCAATTGCTAAAGGATG
AACATGTGGAAATTTTTCAGGAAAGGACTGCCTTGCATGTCTAGGAAGTTGGCGAATGTATCTT
CTTGCATTTTCATTTACAAAATCCAGATCAGCCTCATTTGGCGTTCCGATGAGCTGCAATTAAG
AAATTTATGATAGGAAAATCAAACACACAATAATGTGAAACAGATAGTATATAAATCCTCTAGT
GAGAAATGCGTTTGTATTAATAGCCATGACTCAGAATTCAGTATCCTGCATATCAGCCAGAAAG
CCAGGACCTTCTGGAGCAACATAAATTCTCTCCTCTTTGCATTTTCCTTAGTTTTAACATATTC
CCATAGGATAATCAACATATTATATATTTCCAAAACAGTACTCCAGTTATGCTAAATATATGAC
CACACAACATAACCTGATCAATTCAATATAAAATAAAGTTCAAAAGATAAGAGTGTGTTCTAAC
CTCCATTAGTAGACGTAATTGATGGACATGATCTCTTCCAGGAAACAAAGGTTTACGATCCATG
AGTTCCATAAAAATACAGCCCACAGACCACACATCAATTGCTGCAGTATATTCAGAGGAATTCA
ACAGAAGTTCCGGTGCCCTATACCATCTTGTGACAACATACTCAGTCATAAAATCGGTTTCTGA
GGTGGTACGAGCAAGTCCAAAATCACAAATTTTGAGGTCACAATTTGCATTCAAAAGTAGGTTG
CTGGGCTTCAAGTCTCGGTGAAGGACATTTGCTGAATGTATATACTTCAAGCCACGGAGAATCT
GATAAAGGAAATACTGCACAAAAAGGTAAAGAATTACGCAAGAACAGTTATACCAAACATGTAT
TATTTCTCAGAACATGGTAGATGCATGCACAAGGAAAATACAAGAGAACACAATCAAGTTATCT
GGATAAGGAAAGATAGGTGAGGCAGCCATTCTAGAGTTCCACTCAAGAAAGGGAGAGATCTATC
TGTAGCATTGATCATAAGAGCTTGCAAGCTGCAATACAGCAAGACCTCTCCAGTGTGATTGGGC
ATTGAACCCTTCTCACGTTGAATGTGTTATGTGGGGAATCCTTTGAATGTCTCAAGAACACGAG
TTCGGTGAGCGTGCATGGCACGCCACAGTGTCGTTCTCGCCGTTATCTGTTGCTTGCATTAGAT
AAGAGTTATCCCTTAAGATTTGAGGTTTGTTTCAGTTAGTTCTGATTCATTAGCAGATTGTAAT
CGCCTATATAAGGCCACTCTTTTCTCTGTTTCTCCTCACCATGGCTTTGTGGGAGGCGAGGGCA
TCGGCATCACCCTCCCGTCAAGCACTGCTACAACCTTCGGAGCTGCGGTGCCTTGCCGCCAGCT
CCTAACAGTATGTGGTCTACTGATAAATAGCAATCAACTCATTATTCGATTTTATATCGGTTAG
CAAATAATATGGTATCTCCAAAGAAAACGTTAGTTTGATCCAATGATCAATGGTGCACTGAGAT
AACCTAATTGTAGCACTTTGCATATATGCTTTGCAGGGCAAAGGTACGTTCAGGTATATTAGTA
GGTCGCTAAATTCGTTTCTTAATTTCAAAGATTATGCATACCTGCAGAATTCTTAAAATGTGAT
ACAAAATTACCATAAAAGCTTTACATTCAACCTTTTGTACCAAATTCCTTATAGTTCTTACACA
AAACATTTATAAACCATCAATACATACTTCAATACTTCCCACTTTTTAGGTCTTGAAAACTCAA
TTTGAGCAGAGGCCTAGACAAGCAAGAGAATCCAAGCAGACCAGAAAAGCCATTTGTATGAAAT
AAATGCTAAAGTGGAAATAAAGTTGTGTTTTTCTTTTGAAGAAGGTACCTGGCAGTGCTCCTCT
GACAATGCTTGATTTGAGCGAATAATTTGATGCAGATCAGTATCCATCAATTCATATGCAATAT
AAACGTCATTGAATGAATTCCTTTGTGGAGGAGGTATGATATCCCTTATGGCAACAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.206140169
Functional Information
Coding potential Y
Potential coding position 2809810-2807844(+)
2809758-2809781(-)
Potential amino acid sequence MISLMATICYSLSRIKCQHLFNQINC*(+)
MDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGL
ARTTSETDFMTEYVVTRWYRAPELLLNSSEYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLR
LLMELIGTPNEADLDFVNENARRYIRQLPRHARQSFPEKFPHVHPLAIDLVEKMLTFDPRQRIT
DCCHKGYHTSSTKEFIQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017