Detail information of Os06g0154500_circ_g.4


General Information
CircRNA Name Os06g0154500_circ_g.4
ID in PlantcircBase osa_circ_029733
Alias NA
Organism Oryza sativa
Position chr6: 2809854-2812388  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os06g0154500
Parent gene annotation Mitogen-activated protein kinase, Brassinosteroid (BR) signaling
and homeostasis, Regulation of grain size and plant height (Os0
6t0154500-01)
Parent gene strand -
Alternative splicing Os06g0154500_circ_g.1 Os06g0154500_circ_g.2 Os06g0154500_circ_g.3 Os06g0154500_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AT-GT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAACGAGAATCTCAAAATCTGCGCCTAAAAATCGAGGGTGGGTGGGGGGGAAGGGAATTCC
GTGGTCGAAACAATGGAGCGGATCGGGAGCACTGACtgagacaagttattgccttttggagcat
cgatgtgcaaacacaagagcttgctggatatgtgaaatacaacagaccagctccaaatatctta
taggagta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGAGACAAGTTATTGCCTTTTGGAGCATCGATGTGCAAACACAAGAGCTTGCTGGATATGTGAA
ATACAACAGACCAGCTCCAAATATCTTATAGGAGTAGATAAAATAAGTAAATCAACTATGTCCA
GACCAACCAAAGCAAGAACAAACATATTGCATGGACCAGGAAATACCATATGAAAATGACTTGA
CAAAGAGATCTATCTTATTCATGATGGCTTAATGTTATAGCTCAAGTGTTTTTGCCATTTAAAC
GCTCAAACATGGTGGTTTTTTAAGGAGGCAGACCAACATGCATTTCCCTTAAAATGAAAATTAG
AGTGTGTAATGGGGATGAACAGCAAGCTAATGATGACTTGAATAGTGACTAGTAAAGGGCTTTA
GACGAAGATGGACATATAATAGATCAATAGAAGGAAGCAATGGAGGAGACTTTGCATAATTCTA
ATAACTTATGTAGAGGATTCTAATAATTTATCTCATAGATAAGCTGAACAAACGTGTGTGTAGC
ACAGTGGTAGAGTCTCTGGTAGAGGGGACACCGACCAAGGCTCAAGCCCAGGTTTTGCACAAAA
AAAATCCCCCCTCGTTAATGCTGGTAGAAGAGTGCTCCCCGCGTGAGGTTAAGCATGCCCAGTG
ACGTGCCACGTTCAGGGGCATTTTTCTCGACTTAGCTGAATGCCGCAAGCCATCCTAACCACGG
GCTTTTTTTGTTTGTTTGTTTTTTTATCTCATAGATAAGCTTACATGTACATAGAAAGCAACAG
CTTAGTGCACTTCATAATTAAATGATAACTTGGTATTGAAGTAATATACTGCAGCCAGAAATCG
CTACTCGGGCTGCTGCCTTCTGTCTGCAGCCAACCTGCAGCACGTGCACATGACAAAAAAAAAG
TTCCAATACATCTTTCAGAATACAGGATCGCCAATTTGGAAGTAATGTTTTATGTAATAATGCA
AAATAGCCATTTTTTGTGCAAGCTATATTTTAAAAGTAGAATTGGACTTGATGTACAAATCTTA
GCTCATGTTTCCAACTTTCCGTACATACAATTGAATTTATAGCCAGATTTGAAAAGTAGAATTT
GACTTGATACACAATCTTAGCTGATGGCAATAAAGCAGGTGCATTATCTAAGGACTTCTACTCC
AAAATTTGCCTAATCCGATCGTTTTCTACAAACACCCGTAACTGGTATAACTCCCAAAAGCCTC
CCCTGCATAATTGGAGCACTAAAACCTGAAATTAAACACTTCTCTTTCTGCAGTAGGATACAAA
CAAAATGGATCAGTTTTAGTTTGAAAAAACTTCCAAAAAAAGGCATGAGCATGCATTTGTGTAT
GCCTGTGTCAACCAGTCTATGGTTCAGCAAAAGCAGTATCTGAGCAACTTTTTGTATGAACCTT
TTTTAGGGAAGTATCAATTGATCTATTATGTTATAATAAAGAGGGTGCAAAAGGGTGCCACCAC
GTTCAATCTAGAAGCCTAGAATAACGACATTAATCGGGGAAAAAAGATAAATATATGCCCGTTT
ATTATAGTGGTGGGTCTAGATTACAACGGTCCAGGTTGACCAGTAAATTCTATACAAAATATAA
CTCTAATTTTAAATCTAGCTCCTCTCATATTTGCATGGGAAAATCCACTAGTTTAATTATAACG
GAATATTTATGACCATCCAAATTTAATTCACCTCTTCAGAAGAAGCTGAGTTTTTCTAGGGCTG
GCTATGAAGATATGGCCTATTCTCTAATTCACTTCCCCTGTGGCTGTCTTTCTACCACTAACCA
TAGAAAAAATATGTTGCCTCTGGTAAGCTGAAAATGATACTTCAGGCCTACGCAGGAAATACAA
CAGTGGGCTACTCCTATTAGTCAGTCTTTAAATTGGTAAATTTCAAAGGTCCAAGTCCAACATG
CACACACAAAGTCAATCTCAAAACTTTCCAACAATAACACAATTCCTAGTACTCCTATCCCCTA
ATTCCCTCCCCACTGGCAGTCACTCCCACTGCATTCAGACTGGATTTGACTGACTTAGGAAAAA
GGTGTAACACCAGATTGGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAAGCTAGTTGT
GGCTTGTGACATCAGCACGTACGAGAATCATGTGATGTTGCTACTCTCCAGGTCAGGTCTGTTC
ACATCACTCGCTCCCCCACTATTCAAGAACACAATGAATAACAACATCCCCAAAAGGCAGATGG
CTTCTTTAAAGGCATCTCCAAAGTTACCTCTATTTCTGAAGCTCGCAGCACTCATCATCAGCAG
CAAGAATGGAGGGAAAAGCTCTACCAAATTAGGCCGAGCAGTGACGAACTCAATCATTTGGTAA
CCTAACCCTCACCTCCTCCTCCTTTCCCCATTTAATGCAACCAACTTAACTAACCAGAGACAAG
AGCATTCAACGAGAATCTCAAAATCTGCGCCTAAAAATCGAGGGTGGGTGGGGGGGAAGGGAAT
TCCGTGGTCGAAACAATGGAGCGGATCGGGAGCACTGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.097152055
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017