Detail information of Os11g0545000_circ_g.3


General Information
CircRNA Name Os11g0545000_circ_g.3
ID in PlantcircBase osa_circ_009542
Alias NA
Organism Oryza sativa
Position chr11: 20046091-20046267  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0545000
Parent gene annotation NOP5, N-terminal domain containing protein. (Os11t0545000-01);Co
nserved hypothetical protein. (Os11t0545000-02);NOP5, N-terminal
domain containing protein. (Os11t0545000-03)
Parent gene strand -
Alternative splicing Os11g0544900_circ_ag.1 Os11g0545000_circ_g.1 Os11g0545000_circ_g.2 Os11g0545000_circ_g.4 Os11g0545000_circ_g.5 Os11g0545000_circ_g.6 Os11g0545000_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0545000-03:1
Os11t0545000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGTTTCAGTGGGCACAAAATAGCGAATGAGACGCTTCATGGCCCACATTACGTCCATCACAAC
TTCATCACACAGGCAGGGTATTCCcatctctggtttgatttcaaagccataacgacttaaaaac
atccgtagtccttgactcatagtgaggctgtcctcttcagccagctcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCTCTGGTTTGATTTCAAAGCCATAACGACTTAAAAACATCCGTAGTCCTTGACTCATAGTG
AGGCTGTCCTCTTCAGCCAGCTCGGGTGTTTCAGTGGGCACAAAATAGCGAATGAGACGCTTCA
TGGCCCACATTACGTCCATCACAACTTCATCACACAGGCAGGGTATTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.092749529
Functional Information
Coding potential Y
Potential coding position 20046207-20046115(+)
20046239-20046093(-)
Potential amino acid sequence MRRFMAHITSITTSSHRQGIPISGLISKP*(+)
MDVMWAMKRLIRYFVPTETPELAEEDSLTMSQGLRMFLSRYGFEIKPEMGIPCLCDEVVMDVMW
AMKRLIRYFVPTETPELAEEDSLTMSQGLRMFLSRYGFEIKPEMGIPCLCDEVVMDVMWAMKRL
IRYFVPTETPELAEEDSLTMSQGLRMFLSRYGFEIKPEMGIPCLCDEVVMDVMWAMKRLIRYFV
PTETPELAEEDSLTMSQGLRMFLSRYGFEIKPEM(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017