Detail information of Os04g0442000_circ_g.9


General Information
CircRNA Name Os04g0442000_circ_g.9
ID in PlantcircBase osa_circ_023940
Alias NA
Organism Oryza sativa
Position chr4: 22009244-22009537  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0442000
Parent gene annotation Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-
BP). (Os04t0442000-01)
Parent gene strand +
Alternative splicing Os04g0442000_circ_g.4 Os04g0442000_circ_g.5 Os04g0442000_circ_g.6 Os04g0442000_circ_g.7 Os04g0442000_circ_g.8 Os04g0442000_circ_g.10 Os04g0442000_circ_g.11
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTACCCATCCAGTCATGCATTGTTTTTGATAAAGTGGAGTAATACTTGGGTTATCCTAATTAG
CATTATGATGTGCAAGTTTACATTATCTTGCAGACTgttcaataaattctcattttggttatgc
cctttgtttctggttctttattgtattgagttatggtgcaaattttaatagtaatggttgacgt
ttagacct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 294
Transcript exons: 22009244-22009537
GTTCAATAAATTCTCATTTTGGTTATGCCCTTTGTTTCTGGTTCTTTATTGTATTGAGTTATGG
TGCAAATTTTAATAGTAATGGTTGACGTTTAGACCTATATAAAACTGAATTACTGAAATATGGC
ATTATTGGAATATTGTTTACTCTGCTGAGTGTATGATCATTATAAAAATAAACTTATGTATGAT
GATTTACCCATCCAGTCATGCATTGTTTTTGATAAAGTGGAGTAATACTTGGGTTATCCTAATT
AGCATTATGATGTGCAAGTTTACATTATCTTGCAGACT

Genomic sequence GTTCAATAAATTCTCATTTTGGTTATGCCCTTTGTTTCTGGTTCTTTATTGTATTGAGTTATGG
TGCAAATTTTAATAGTAATGGTTGACGTTTAGACCTATATAAAACTGAATTACTGAAATATGGC
ATTATTGGAATATTGTTTACTCTGCTGAGTGTATGATCATTATAAAAATAAACTTATGTATGAT
GATTTACCCATCCAGTCATGCATTGTTTTTGATAAAGTGGAGTAATACTTGGGTTATCCTAATT
AGCATTATGATGTGCAAGTTTACATTATCTTGCAGACT
Conservation Information
Conserved circRNAs NA
PMCS 0.244206066
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017