Detail information of Os10g0567400_circ_g.6


General Information
CircRNA Name Os10g0567400_circ_g.6
ID in PlantcircBase osa_circ_008062
Alias NA,
Organism Oryza sativa
Position chr10: 22484083-22484492  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder, CIRI-long
Parent gene Os10g0567400
Parent gene annotation Similar to Rieske. (Os10t0567400-01);Similar to Isoform 2 of Chl
orophyllide a oxygenase, chloroplastic. (Os10t0567400-02);Simila
r to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os
10t0567400-03)
Parent gene strand -
Alternative splicing Os10g0567200_circ_ag.1 EPlOSAG00000036674_circ_ig.1 Os10g0567300_circ_g.1 Os10g0567300_circ_g.2 Os10g0567300_circ_g.3 Os10g0567400_circ_g.1 Os10g0567400_circ_g.2 Os10g0567400_circ_g.3 Os10g0567400_circ_g.4 Os10g0567400_circ_g.5 Os10g0567400_circ_g.7 Os10g0567400_circ_g.8 Os10g0567400_circ_g.9 Os10g0567400_circ_g.10 Os10g0567400_circ_g.11
Support reads 3
Tissues shoot, root, seed, leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0567400-01:2
Os10t0567400-03:2
Os10t0567400-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCCTTCTTGCTCAAAGCATGGTAATGACCGGATGCGCACGTTGAGCATCTTTGTGGATGGCA
TTTTCTCACATTTTCCATCAGTTGAATACTCCCAACcttggaacactccaacccttggcaaagg
tggatgtatgagtaaaaggagcatgagcaagatctaatagattgtccagaagaagtccatgctc
cactggta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 298
Transcript exons: 22484083-22484195,22484308-22484492
CTTGGAACACTCCAACCCTTGGCAAAGGTGGATGTATGAGTAAAAGGAGCATGAGCAAGATCTA
ATAGATTGTCCAGAAGAAGTCCATGCTCCACTGGTAGCTCCATCACTATCTCTGCGTGAATTGT
AAATCCTGAAGGAGGCAGCAGAGAAGGGATAGTCGACTTCGGTGGGTCATTGCCAGGCCATATC
CAAACCATTCCTTCTTGCTCAAAGCATGGTAATGACCGGATGCGCACGTTGAGCATCTTTGTGG
ATGGCATTTTCTCACATTTTCCATCAGTTGAATACTCCCAAC

Genomic sequence CTTGGAACACTCCAACCCTTGGCAAAGGTGGATGTATGAGTAAAAGGAGCATGAGCAAGATCTA
ATAGATTGTCCAGAAGAAGTCCATGCTCCACTGGTAGCTCCATCACTATCTGTTGATGATCAAG
AACAATTCCATTACTTTTCAGTCCAGTAAAAATCTTGAAATGCACAGGACAGTTCCACATAGTA
TGGTTGCTGCAGCATGACATGATCTCCTTTTACCTCTGCGTGAATTGTAAATCCTGAAGGAGGC
AGCAGAGAAGGGATAGTCGACTTCGGTGGGTCATTGCCAGGCCATATCCAAACCATTCCTTCTT
GCTCAAAGCATGGTAATGACCGGATGCGCACGTTGAGCATCTTTGTGGATGGCATTTTCTCACA
TTTTCCATCAGTTGAATACTCCCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.508337988
Functional Information
Coding potential Y
Potential coding position 22484427-22484144(+)
22484452-22484118(+)
22484136-22484476(-)
22484459-22484476(-)
Potential amino acid sequence MRTLSIFVDGIFSHFPSVEYSQPWNTPTLGKGGCMSKRSMSKI*(+)
MAFSHIFHQLNTPNLGTLQPLAKVDV*(+)
MLLLLIHPPLPRVGVFQGWEYSTDGKCEKMPSTKMLNVRIRSLPCFEQEGMVWIWPGNDPPKST
IPSLLPPSGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRLGVFN*(-)
MPSTKMLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGLLLD
NLLDLAHAPFTHTSTFAKGWSVPRLGVFN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017; this study