Detail information of Os04g0684500_circ_g.8


General Information
CircRNA Name Os04g0684500_circ_g.8
ID in PlantcircBase osa_circ_026036
Alias Os04circ18487
Organism Oryza sativa
Position chr4: 34965141-34969846  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method SMALT, Segemehl
Parent gene Os04g0684500
Parent gene annotation Pentatricopeptide repeat domain containing protein. (Os04t068450
0-01);Hypothetical conserved gene. (Os04t0684500-02)
Parent gene strand +
Alternative splicing Os04g0684500_circ_g.2 Os04g0684500_circ_g.3 Os04g0684500_circ_g.4 Os04g0684500_circ_g.5 Os04g0684500_circ_g.6 Os04g0684500_circ_g.7
Support reads 4
Tissues leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os04t0684500-02:4
Os04t0684500-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAGGTG
TAATTTCCTCTCTAGTCTCTAGAATTACAAGGCAAGatgggctcggagaggtgatgtttgggaa
gcagaggacttgatgaagcagatgaaagaagatggtgtccctcctaacatccatacttatacct
cctatata
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 284
Transcript exons: 34965141-34965270,34969693-34969846
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC
AGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCGAGTGA
TGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAGGTGTAATTTCC
TCTCTAGTCTCTAGAATTACAAGGCAAG

Genomic sequence ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC
AGGTACGAGAATTTTGCATTGGAATACTTAGTTTCTTACTTATTGTGAGTTGTAACCGTGTAGT
GGAGATAGCCTGATTTTGATAGGATATGTGCACATGTTTTAAGGTAGCTGACCAAAATATTTTA
CAATGCCATGACTATATGCCCGAATTATTTCAGCACTACAGATTTACCTAGGTGGCTACATATT
CAAATTTGGCACTTGTGAATGGAGAAGTATTCTCTTGGGGCCTTCTTGTAATCTATCCAATTAT
TTTTTTTTATAAAATGATTTGTTTGTAGAGAGCAGAAAAGGTGATTGAAGAAATGGTAGATGTT
GGACTAAAACCTAATGTCAAGACATATACTACCTTGATTAAAGGTTGGGCAAGAGTGTCACTTC
CAGACAGGGCATTGAAATGCTTTGAGGAGATGAAACTTGCTGGGTTGAAACCTGATGAGGCTTC
TTATCATTGCTTGGTGACTTCACTTCTGTCAAGGGCAACTGTAATGGAGGGAAGTACCTACACA
GGAATCATTAGTGTCTGTAGAGAAATGTCTGAGAATGATTTGACTGTTGATCTTCGCACTGCTG
TTCACTGGTCTAGATGGCTTCACAAGATTGAGAGGACTGGAGGGGCACTAACAGAAGCGCTTCA
GAGAATATTTCCTCCTGATTGGAATTCATTAGAATTTTTAGGAGAGCCATCCAGTTCTATAAGC
ATGGGGGAGTCTGATGATTACAGTGATTCAGATTTTAGCGGTGATGAAGATGAGGATCATAATA
TTGATGATAGCTGAAAAACTCTAGATTCCAGAGCCTGTTTTTCTTGTTCTGTGCCCTCACTTTT
TGTCCTTTGGTTCTGCCAGAGTGGATGACCGAACAAGGTATTATGTGTTGAACTGTTAATATGT
GTTTAATATGCCATTTCCTTTTGGTGATGTTTCTAAAAAGCACACATAATAATTCTTGAAAAGG
AGTCTGCCAACAATCATTTGTCATTACTCATTGCCACTTTTTGGAGTTCCTGGAAATTGCATTG
AACTAACACTCTTTGTTTCCATGGCAGCAATGTCTTTGATCAAACTGTGCCCTCACATTCAGAC
ACCAGTGGCTTGTGGACTATCCAAGAGCGTTTGGAATCTTATAGTGCAATAAGCGTGAGCTGGC
TGGCCTCTGCTGCGTTTCTTCAAGAGCAACAGTCAGTAACAGTTCTACTGGGACTGAAGACACA
GGCTGTCAATGCAACAGACGAAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAATGGCTGG
CACAGGTAAATATTCTTGAGATATTGACAGATTCAATTGTTGTTTCTCTCCATCCTTTCAGTAT
AGTCCAACTTGATATAAAATCCAATTCCATATATATGTGTATAAATGCAAGTAAAGCTATACCA
CGTTACCAGTTACCACCCACACCCCTTCTTGGCTTGCCTTTTGTAGTGTGCCATGTGAAATGTA
CCGACCATGATAGAGCCTGCGTGCCCATTTTTCAACATCCAAATGTTAGGAGTGGTAGGAGCGC
TTATAGGCATATGCTTGAACACCACTTTGATTGGCAGAATTTTGTAGGGGCAGCACAGTGTGCC
TACAAGGTTTGGTTTTGTAACCACATCCCTGGACAAGCCGTTCGATGCTTATTTGAATACTAGT
ACGACAAACCAATCTGTGTCGTGGTGCTCGTAAAAGCTGAGATCATTTAAACTTGTAAGTAGAA
AGTTGGACGAGCTTTTTTCTCTTCGAGAGAATGCACAGGCCCTCATGTTCTTTGTTTTGATGAT
CTTAAAAAAACCATAGTCAAGGTAAATAGGAGCAAAGATTGGTATCTTGCACATTATTGCGGGT
TGGGCTTATTCAATGGGGGAATTCCCTATTGAAACTGAAGTACAAGTCCAATCAAGTGCTAGAT
GATGACTGTTTTCTCATTTAAGGTTTGGCATCTTCCAGTACAGCAGCTTCAATCAAATGGGCCT
TAACGTAGCTCAGCCCGATTCAATATTACTTGGAATTGCACGCCTCTGTCCAAGCTGAAAGCTT
TTACTAGTAGGACACTTGAATGCCTGCACAAGACGGCATTAATGCTGTGCTTATGAGCCCGATT
TCTTGAGACTGGTGTTGAGTTTGTGCGTATGTGTGTGCTATGAGCTGCGAATCTTAGCTGGCCG
GTATCTTTCATTGAATCGAAAGTGGCCTCCCCATTCAAGTCTTGCCCACAAGATAAAACAGTGC
TTCATTTATGCCTGTTATTTAATTTTGCTTAGCTGCATCTCGCTTCTCCATTCATACACCATAA
ATTCTTTCAAAGAAATCTTGATTGTATTAGTGTTGTATTAGGCCTTTGTTCGGAGAGAAAATTT
CATAGTACCAATTACCCCCTCCATCCCAAAATATAATAACTTCTATCACTAAGAGTTTGTTCCA
AAATAAAATAACTTATCCACCAACATTCTCTTCCTAACTAATCATAACCCTGCACCATTTAATT
TTTCCATCTACCTCCACTTCTCAACCAATCACAATATCATCATATTTAATTCTATCTACTTTCT
TAATAATTGTGTTTAATCCTAAAATTTCTTATGTTCTGGGACGGAGATAGTAGCATGTATGAAC
AGTATGAAGTACTACAATGTAAATATTTTGCCTGAAACATGCTTTGTTTTTTTTCATGCCAAAT
AATTCAGTGTGATATTTGGTAATTCATACAGTATTCCTTCCTTTTATACCCACTCTAGTTTCAA
ATACTTGTCACTAGTTACTACTTACTACTAGCTTTTTTCCCTAAAAAAGTTACTAGCTTTTTAG
CTTTGATCACTCGCCCTTTTTGCAAAAATGAAACATATGTATACTTAAAATATGTTGCATTAGC
GATGTGTGTTCCATAAATACAACCAGACAACTTTCACTAATAATAACTTAATCTTTAAAAGTTA
TTAATGGTTAAAGGTGAAACATTATGGTTAACATTGACAAGTAAATAAAGATGGAAGGAATACA
TATTTTCTAAAGATAGGTACGGTCCTACAGGCTTTGTCCAGCAAAAAAAAAAGGACAGTTCTGC
AGAACAAAAATATTTTGGTGGAGTTTTTAAACATTGCATCCAACAGAAGCCTTATGGTATATTT
TTTTTCTATGATAAGAGAATTTATTCTGGTTTTTTACTTAAAAGAAGCTGCAACCAATTATTAT
AGAATTTGCAGAATGAATAGCTGCGGATTACAAAATTATGAAACACAAAGTAGAAAACTACTAA
GAATACCACCCTTAAAACAAAGATCTACATCTATGGTTAGTCAGAGGGGAGTAGATTCTAATCC
CTCGAGGGGATATCCCTTCGTATATCTTTTTCTTCCAAATTCGATGCAAATAGTTGTGAAAAAT
TCTGAAAAAAATTGACAACGTAGAGTATAATGATACCTACTAGTCCACCAAAATTCATGTTCAA
ATTCGATCTACACATCGAGAAACAAAAAAGACAAATTTAGATATAAACAGTACGTTACTATTCA
TACGCTGAATTTGTCTTTTTTATATCTCGACGTGGGAGTTGAGTTTGGACTTAAGATTTTGTGA
AGTTGTATATATGTGTTGTATGAATGTTGTCAAATTTTTCCAGAATTTTTCATAACCGTTTAGA
TGGTTTTTGAGCAAACGAGCGAACATCCCCTCGAGGGATTAGAATAGTTTCCCTTAGTCAGAGT
ATGTTTAACGTTGTTTGCTCCAATGGTTATAAGTTGTACAGTCTCTGAAACCAGCAGCCGATCT
TTGTCGATCGAATTTCGATCCCATCACTGCCGATGAACTGACATTGAACCAAAACGGAAGAAGC
CTTATGGTATGGGTGGAGAATGAAAATAGGAAAGAGACAGGAAACATCTTTATTCCTAAACTAG
TACTCCCTCCGTCCCATAATATAAGGGATTTTAGAGGTATGTGATGTTTCCTCGGACTACGAAT
CTAGATCACATCCCTCTAAAATCCCTTATATTATGGGATGGAGAGAGTAACAATTAATAGGAAA
TGACACAACAGGATAGCAGAAACTGAAAACTTCCTTTCATTTTCTGGGGAAAAAAGGGGAAATT
TGACGTTTGGAGCTCATCTGTAGTGGAGATTTAACTGTTCCAAAAGTTTAGAATAGTGGCAGCT
ATGTTGATACAGCACTATGTTATCTTTTCTCAGCAGACGTGCTGGTAAAAAAAATTTAGTGCGA
AGGGACCATTGCTAGTTGGCCCTTACTTTTATATTACTGTAACTGATCCAGAATTAAATTTCTA
CCTATTTTCTTTGAAAGAGCACGAAAGCACATATCAATAATTTTGGTAATATTATTCATTTATC
ATAATCTATTTTGCTATACGCTCCGACCACTGCACAATGACAGTATTTATTTCGCAGAGAGGCC
AACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGC
GAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAGGTGTA
ATTTCCTCTCTAGTCTCTAGAATTACAAGGCAAG
Conservation Information
Conserved circRNAs osi_circ_005859*
PMCS 0.358861225
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5161
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015