Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G07890_circ_g.7 |
ID in PlantcircBase | ath_circ_001210 |
Alias | At_ciR424, AT1G07890_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 2437993-2438556 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, find_circ, CIRI-full, CIRI2 |
Parent gene | AT1G07890 |
Parent gene annotation |
MEE6 |
Parent gene strand | + |
Alternative splicing | AT1G07890_circ_g.1 AT1G07890_circ_g.2 AT1G07890_circ_g.3 AT1G07890_circ_g.4 AT1G07890_circ_g.5 AT1G07890_circ_g.6 AT1G07890_circ_g.8 AT1G07890_circ_g.9 AT1G07890_circ_g.10 AT1G07890_circ_g.11 AT1G07890_circ_g.12 AT1G07890_circ_g.13 AT1G07890_circ_g.14 AT1G07890_circ_g.15 AT1G07890_circ_g.16 AT1G07890_circ_g.17 AT1G07890_circ_g.18 |
Support reads | 26/3/5 |
Tissues | leaf/root/seedlings |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G07890.7:3 AT1G07890.6:3 AT1G07890.1:3 AT1G07890.8:3 AT1G07890.5:3 AT1G07890.2:3 AT1G07890.4:3 AT1G07890.3:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.31236004 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
2438005-2438553(+) |
Potential amino acid sequence |
MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDA EQAHGANSGIHIALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGRESLAKMTKN YPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAH GANSGIHIALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGRESLAKMTKNYPTV SEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANS GIHIALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGRESLAKMTKNYPTVSEDY KKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHI ALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGRE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress; responsive to heat stress |
Other Information | |
---|---|
References | Ye et al., 2015;Chu et al., 2017;Pan et al., 2017;Zhang et al., 2019 |