Detail information of Os04g0457800_circ_g.13


General Information
CircRNA Name Os04g0457800_circ_g.13
ID in PlantcircBase osa_circ_024053
Alias Os_ciR4809
Organism Oryza sativa
Position chr4: 22869231-22869601  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0457800
Parent gene annotation Similar to SERK1 (Fragment). (Os04t0457800-01);Similar to H0523F
07.15 protein. (Os04t0457800-02)
Parent gene strand -
Alternative splicing Os04g0457800_circ_g.12 Os04g0457800_circ_g.14 Os04g0457800_circ_g.15
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0457800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGGGACATCAAAGAAGTGTTCTTCAGGTTTACGCCGCCGCCACCATGCAAATCCAATTGCCG
GAACCGCAAACAGCAATGCAGCAGCTGCAGCAACACcaccaggggtacgttcttcttttaatct
tttcactgctaccaacgagccatctgccagtctacctttgtacacctttccaaagccacctctt
cccagaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACCAGGGGTACGTTCTTCTTTTAATCTTTTCACTGCTACCAACGAGCCATCTGCCAGTCTACC
TTTGTACACCTTTCCAAAGCCACCTCTTCCCAGAATATTCTTATTGCTAAAGTTATCAGTAGCA
ACTTGAAGCTCCCGGAGTGAGAATCTCTTAAGTTGGCCAAGGTGCACTTCCGGATCCTCCTCAG
CTGAATTTAAAGGAGAATATAGATTATTTAAATGGATAACATAAGTATCATGAACTGCAGTATG
CAACTATAATACCAACCAGGGACATCAAAGAAGTGTTCTTCAGGTTTACGCCGCCGCCACCATG
CAAATCCAATTGCCGGAACCGCAAACAGCAATGCAGCAGCTGCAGCAACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.382781402
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015