Detail information of Os04g0457800_circ_g.14


General Information
CircRNA Name Os04g0457800_circ_g.14
ID in PlantcircBase osa_circ_024054
Alias NA
Organism Oryza sativa
Position chr4: 22869503-22869863  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0457800
Parent gene annotation Similar to SERK1 (Fragment). (Os04t0457800-01);Similar to H0523F
07.15 protein. (Os04t0457800-02)
Parent gene strand -
Alternative splicing Os04g0457800_circ_g.12 Os04g0457800_circ_g.13 Os04g0457800_circ_g.15
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0457800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTGTTGGGGGATTGAAAGGAGGTGGTGGAGAAAAAGGTGGAGCTCCAGGGCAGGGTTTTGTA
GTACCCGGGCCACAAAGATCTTTATTATTAGCAAAAcagggacatcaaagaagtgttcttcagg
tttacgccgccgccaccatgcaaatccaattgccggaaccgcaaacagcaatgcagcagctgca
gcaacacc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 242
Transcript exons: 22869503-22869631,22869751-22869863
CAGGGACATCAAAGAAGTGTTCTTCAGGTTTACGCCGCCGCCACCATGCAAATCCAATTGCCGG
AACCGCAAACAGCAATGCAGCAGCTGCAGCAACACCTCCAGCAATTGCTCCAGTTTTGGAGTCA
CCTTGTGACACAGTAGGTGTTGGGGGATTGAAAGGAGGTGGTGGAGAAAAAGGTGGAGCTCCAG
GGCAGGGTTTTGTAGTACCCGGGCCACAAAGATCTTTATTATTAGCAAAA

Genomic sequence CAGGGACATCAAAGAAGTGTTCTTCAGGTTTACGCCGCCGCCACCATGCAAATCCAATTGCCGG
AACCGCAAACAGCAATGCAGCAGCTGCAGCAACACCTCCAGCAATTGCTCCAGTTTTGGAGTCA
CCTGATGGAATAGAATTAATTCCACCCGAATATGTCAAATCCCCTGTCTGCATCATTTATGCAT
ATGCATATCCCAAGCAGTATCACAAATGTAACAGAATTAAAACTATAGAGAATCACCTTGTGAC
ACAGTAGGTGTTGGGGGATTGAAAGGAGGTGGTGGAGAAAAAGGTGGAGCTCCAGGGCAGGGTT
TTGTAGTACCCGGGCCACAAAGATCTTTATTATTAGCAAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.270474054
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017