Detail information of Os04g0457800_circ_g.12


General Information
CircRNA Name Os04g0457800_circ_g.12
ID in PlantcircBase osa_circ_024052
Alias Os_ciR9371
Organism Oryza sativa
Position chr4: 22869081-22870470  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os04g0457800
Parent gene annotation Similar to SERK1 (Fragment). (Os04t0457800-01);Similar to H0523F
07.15 protein. (Os04t0457800-02)
Parent gene strand -
Alternative splicing Os04g0457800_circ_g.13 Os04g0457800_circ_g.14 Os04g0457800_circ_g.15
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0457800-02:1
Os04t0457800-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCAGTGAAGTTGTTCAGGTAAAGATCCAAACTGACCAAGTTAGTTAAGTTTCCCAGTTCATTA
GGTATTGTCCCACTTATGTTGTTGCTGTAAAGCTCCctcgcaatcgtgatgcgacactcccatt
agccatgtagggatagacaagtaaccgttctgtaggcgtcatgcaaaatccacggagccgaagc
aggttcct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 872
Transcript exons: 22869081-22869422,22869503-22869631,22869751-22869863,22
869945-22870016,22870132-22870203,22870327-22870470
CTCGCAATCGTGATGCGACACTCCCATTAGCCATGTAGGGATAGACAAGTAACCGTTCTGTAGG
CGTCATGCAAAATCCACGGAGCCGAAGCAGGTTCCTATGCACCGCCATGCTAATCATTTCAACT
TCTGTTTGGAACTGGAGCTCACCACCAGGGGTACGTTCTTCTTTTAATCTTTTCACTGCTACCA
ACGAGCCATCTGCCAGTCTACCTTTGTACACCTTTCCAAAGCCACCTCTTCCCAGAATATTCTT
ATTGCTAAAGTTATCAGTAGCAACTTGAAGCTCCCGGAGTGAGAATCTCTTAAGTTGGCCAAGG
TGCACTTCCGGATCCTCCTCAGCAGGGACATCAAAGAAGTGTTCTTCAGGTTTACGCCGCCGCC
ACCATGCAAATCCAATTGCCGGAACCGCAAACAGCAATGCAGCAGCTGCAGCAACACCTCCAGC
AATTGCTCCAGTTTTGGAGTCACCTTGTGACACAGTAGGTGTTGGGGGATTGAAAGGAGGTGGT
GGAGAAAAAGGTGGAGCTCCAGGGCAGGGTTTTGTAGTACCCGGGCCACAAAGATCTTTATTAT
TAGCAAAACTTATAGGGGTAAAGAGTGAAAAGGAGCCAGTAGACGGAACCTCTCCTGAGAGATT
GTTATTTGAGAGATCCAGAACTTGAAGAGTAGTGATATTGGTCAAGGATTTTGGAATTGAACCA
GAAAGACTGTTGTTGTTAAGACGAAGGAAACGCAGCTTGTAGAGTTGCCCCAAGGTTTCCGGAA
TAAAACCAGTGAAGTTGTTCAGGTAAAGATCCAAACTGACCAAGTTAGTTAAGTTTCCCAGTTC
ATTAGGTATTGTCCCACTTATGTTGTTGCTGTAAAGCTCC

Genomic sequence CTCGCAATCGTGATGCGACACTCCCATTAGCCATGTAGGGATAGACAAGTAACCGTTCTGTAGG
CGTCATGCAAAATCCACGGAGCCGAAGCAGGTTCCTATGCACCGCCATGCTAATCATTTCAACT
TCTGTTTGGAACTGGAGCTCACCACCAGGGGTACGTTCTTCTTTTAATCTTTTCACTGCTACCA
ACGAGCCATCTGCCAGTCTACCTTTGTACACCTTTCCAAAGCCACCTCTTCCCAGAATATTCTT
ATTGCTAAAGTTATCAGTAGCAACTTGAAGCTCCCGGAGTGAGAATCTCTTAAGTTGGCCAAGG
TGCACTTCCGGATCCTCCTCAGCTGAATTTAAAGGAGAATATAGATTATTTAAATGGATAACAT
AAGTATCATGAACTGCAGTATGCAACTATAATACCAACCAGGGACATCAAAGAAGTGTTCTTCA
GGTTTACGCCGCCGCCACCATGCAAATCCAATTGCCGGAACCGCAAACAGCAATGCAGCAGCTG
CAGCAACACCTCCAGCAATTGCTCCAGTTTTGGAGTCACCTGATGGAATAGAATTAATTCCACC
CGAATATGTCAAATCCCCTGTCTGCATCATTTATGCATATGCATATCCCAAGCAGTATCACAAA
TGTAACAGAATTAAAACTATAGAGAATCACCTTGTGACACAGTAGGTGTTGGGGGATTGAAAGG
AGGTGGTGGAGAAAAAGGTGGAGCTCCAGGGCAGGGTTTTGTAGTACCCGGGCCACAAAGATCT
TTATTATTAGCAAAACTGCGACAATGAAATAACCATTTGTCAGCCTCACAAGATGTAGTAAGCA
CTAAGAACCTAAATTCTATCTAGAAAAAGCACCTTATAGGGGTAAAGAGTGAAAAGGAGCCAGT
AGACGGAACCTCTCCTGAGAGATTGTTATTTGAGAGATCCCTGCATAAATTATTGGACATTTTG
TTAATATGTATCCATCTTAAAGTCTATTACCATGTAAGCAATAATTTCTACAGGTAGACACCAA
ATATGAATTAGCAGAAAGGGAACTTACAGAACTTGAAGAGTAGTGATATTGGTCAAGGATTTTG
GAATTGAACCAGAAAGACTGTTGTTGTTAAGACGACTATCCTTACAAGAAGACATGCAAATAAA
GAATTATGTTATGATCATTCAAACAGGAAGGCCTTCAATGATATACACAATTTATAATTCTATT
CATAATAAAAAAAAAGTGGAGTACACTTACAGGAAACGCAGCTTGTAGAGTTGCCCCAAGGTTT
CCGGAATAAAACCAGTGAAGTTGTTCAGGTAAAGATCCAAACTGACCAAGTTAGTTAAGTTTCC
CAGTTCATTAGGTATTGTCCCACTTATGTTGTTGCTGTAAAGCTCC
Conservation Information
Conserved circRNAs osi_circ_005517*
PMCS 0.395019496
Functional Information
Coding potential Y
Potential coding position 22869203-22870450(-)
22869109-22870434(-)
Potential amino acid sequence MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRGSFTATT*(-)
MGVSHHDCEGALQQQHKWDNT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017