Detail information of Os10g0567400_circ_g.5


General Information
CircRNA Name Os10g0567400_circ_g.5
ID in PlantcircBase osa_circ_008061
Alias NA
Organism Oryza sativa
Position chr10: 22483963-22484082  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0567400
Parent gene annotation Similar to Rieske. (Os10t0567400-01);Similar to Isoform 2 of Chl
orophyllide a oxygenase, chloroplastic. (Os10t0567400-02);Simila
r to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os
10t0567400-03)
Parent gene strand -
Alternative splicing Os10g0567200_circ_ag.1 EPlOSAG00000036674_circ_ig.1 Os10g0567300_circ_g.1 Os10g0567300_circ_g.2 Os10g0567300_circ_g.3 Os10g0567400_circ_g.1 Os10g0567400_circ_g.2 Os10g0567400_circ_g.3 Os10g0567400_circ_g.4 Os10g0567400_circ_g.6 Os10g0567400_circ_g.7 Os10g0567400_circ_g.8 Os10g0567400_circ_g.9 Os10g0567400_circ_g.10 Os10g0567400_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTTCTAAAAAAAAAAAAAAGAATTCCACATGGCTGTGAAAATATATGTATGTAAATACctgg
gaaatgaacatagcatcagcatgatgatttctgaagacatttccacatggctatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGGAAATGAACATAGCATCAGCATGATGATTTCTGAAGACATTTCCACATGGCTATCCATTT
TCTAAAAAAAAAAAAAAGAATTCCACATGGCTGTGAAAATATATGTATGTAAATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.495413194
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017